9DZJ | pdb_00009dzj

Human GC-A bound to ANP and 2xREGN5308


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9DZJ

This is version 1.1 of the entry. See complete history

Literature

Structural insights into single-pass transmembrane receptor GC-A activation by distinct antihypertensive antibodies.

Liu, S.Manzo, O.Wang, J.Zhu, L.Xiao, F.Su, Y.C.Kurre, D.Liu, W.Miao, Y.Di Lorenzo, A.Huang, X.Y.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-71594-7
  • Primary Citation Related Structures: 
    9DZF, 9DZG, 9DZH, 9DZJ, 9DZK

  • PubMed Abstract: 

    The single-pass transmembrane receptor guanylyl cyclase A (GC-A), also known as natriuretic peptide receptor A (NPR-A) or NPR1, regulates blood pressure through vasodilation and natriuresis, making it a promising therapeutic target for hypertension and heart failure. We describe two monoclonal antibodies, XX16 and REGN5308, that differentially activate GC-A. Using cryo-electron microscopy and molecular dynamics simulations, we reveal that XX16 stabilizes GC-A in an active conformation even without its ligand ANP, whereas REGN5308 requires ANP to fully promote receptor activation. Both antibodies increase ANP binding affinity to GC-A and enhance GC-A-mediated cGMP signaling, although XX16 exerts a stronger stabilizing influence on ATP and GTP binding. In a mouse model of obesity-induced hypertension, XX16 treatment significantly reduces blood pressure, underscoring its therapeutic potential. These findings outline the structural and functional basis of GC-A activation by antibody positive allosteric modulators, offering strategies for durable antihypertensive therapies and improved management of cardiovascular diseases.


  • Organizational Affiliation
    • Department of Biochemistry and Biophysics, Weill Medical College of Cornell University, New York, NY, USA.

Macromolecule Content 

  • Total Structure Weight: 333.79 kDa 
  • Atom Count: 10,145 
  • Modeled Residue Count: 1,334 
  • Deposited Residue Count: 2,970 
  • Unique protein chains: 4

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
REGN5308 - Heavy chainA [auth H],
C [auth G]
227Mus musculusMutation(s): 0 
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
REGN5308 - Light chainB [auth L],
D [auth K]
213Mus musculusMutation(s): 0 
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Atrial natriuretic peptide receptor 1E [auth A],
F [auth B]
1,031Homo sapiensMutation(s): 0 
Gene Names: NPR1ANPRA
EC: 4.6.1.2
UniProt & NIH Common Fund Data Resources
Find proteins for P16066 (Homo sapiens)
Explore P16066 
Go to UniProtKB:  P16066
PHAROS:  P16066
GTEx:  ENSG00000169418 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16066
Glycosylation
Glycosylation Sites: 4Go to GlyGen: P16066-1
Sequence Annotations
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Atrial natriuretic peptideG [auth C]28Homo sapiensMutation(s): 0 
Gene Names: NPPAANPPND
UniProt & NIH Common Fund Data Resources
Find proteins for P01160 (Homo sapiens)
Explore P01160 
Go to UniProtKB:  P01160
PHAROS:  P01160
GTEx:  ENSG00000175206 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01160
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Reference Sequence

Oligosaccharides

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Entity ID: 5
MoleculeChains Length2D Diagram GlycosylationD Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseH [auth E],
I [auth D],
K [auth I],
M
3N-Glycosylation
Glycosylation Resources
GlyTouCan: G15407YE
GlyCosmos: G15407YE
GlyGen: G15407YE
Entity ID: 6
MoleculeChains Length2D Diagram GlycosylationD Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseJ [auth F],
L [auth J]
2N-Glycosylation
Glycosylation Resources
GlyTouCan: G42666HT
GlyCosmos: G42666HT
GlyGen: G42666HT

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2026-01-21
    Type: Initial release
  • Version 1.1: 2026-08-05
    Changes: Data collection, Database references