9C7V

Structure of the human BOS:human EMC complex in GDN

  • Classification: MEMBRANE PROTEIN
  • Organism(s): Homo sapiens
  • Expression System: Homo sapiens
  • Mutation(s): No 

  • Deposited: 2024-06-11 Released: 2024-08-21 
  • Deposition Author(s): Nguyen, V.N., Tomaleri, G.P., Voorhees, R.M.
  • Funding Organization(s): Howard Hughes Medical Institute (HHMI), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Heritage Medical Research Institute

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Role of a holo-insertase complex in the biogenesis of biophysically diverse ER membrane proteins.

Page, K.R.Nguyen, V.N.Pleiner, T.Tomaleri, G.P.Wang, M.L.Guna, A.Hazu, M.Wang, T.Y.Chou, T.F.Voorhees, R.M.

(2024) Mol Cell 

  • DOI: https://doi.org/10.1016/j.molcel.2024.08.005
  • Primary Citation of Related Structures:  
    9C7U, 9C7V

  • PubMed Abstract: 

    Mammalian membrane proteins perform essential physiologic functions that rely on their accurate insertion and folding at the endoplasmic reticulum (ER). Using forward and arrayed genetic screens, we systematically studied the biogenesis of a panel of membrane proteins, including several G-protein-coupled receptors (GPCRs). We observed a central role for the insertase, the ER membrane protein complex (EMC), and developed a dual-guide approach to identify genetic modifiers of the EMC. We found that the back of Sec61 (BOS) complex, a component of the multipass translocon, was a physical and genetic interactor of the EMC. Functional and structural analysis of the EMC⋅BOS holocomplex showed that characteristics of a GPCR's soluble domain determine its biogenesis pathway. In contrast to prevailing models, no single insertase handles all substrates. We instead propose a unifying model for coordination between the EMC, the multipass translocon, and Sec61 for the biogenesis of diverse membrane proteins in human cells.


  • Organizational Affiliation

    Division of Biology and Biological Engineering, California Institute of Technology, 1200 E. California Ave., Pasadena, CA 91125, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 10A [auth 10]262Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q5UCC4 (Homo sapiens)
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Go to UniProtKB:  Q5UCC4
PHAROS:  Q5UCC4
GTEx:  ENSG00000161671 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5UCC4
Glycosylation
Glycosylation Sites: 1Go to GlyGen: Q5UCC4-1
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 1B [auth 1]993Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N766 (Homo sapiens)
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Go to UniProtKB:  Q8N766
PHAROS:  Q8N766
GTEx:  ENSG00000127463 
Entity Groups  
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UniProt GroupQ8N766
Glycosylation
Glycosylation Sites: 3Go to GlyGen: Q8N766-1
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 2C [auth 2]297Homo sapiensMutation(s): 0 
Gene Names: EMC2KIAA0103TTC35
UniProt & NIH Common Fund Data Resources
Find proteins for Q15006 (Homo sapiens)
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PHAROS:  Q15006
GTEx:  ENSG00000104412 
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UniProt GroupQ15006
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 3D [auth 3]261Homo sapiensMutation(s): 0 
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Find proteins for Q9P0I2 (Homo sapiens)
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PHAROS:  Q9P0I2
GTEx:  ENSG00000125037 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 4E [auth 4]183Homo sapiensMutation(s): 0 
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PHAROS:  Q5J8M3
GTEx:  ENSG00000128463 
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UniProt GroupQ5J8M3
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Membrane magnesium transporter 1F [auth 5]131Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N4V1 (Homo sapiens)
Explore Q8N4V1 
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PHAROS:  Q8N4V1
GTEx:  ENSG00000169446 
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UniProt GroupQ8N4V1
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 6G [auth 6]110Homo sapiensMutation(s): 0 
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Find proteins for Q9BV81 (Homo sapiens)
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PHAROS:  Q9BV81
GTEx:  ENSG00000127774 
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UniProt GroupQ9BV81
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 7H [auth 7]242Homo sapiensMutation(s): 0 
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Find proteins for Q9NPA0 (Homo sapiens)
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PHAROS:  Q9NPA0
GTEx:  ENSG00000134153 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 8I [auth 8]210Homo sapiensMutation(s): 0 
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Find proteins for O43402 (Homo sapiens)
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PHAROS:  O43402
GTEx:  ENSG00000131148 
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UniProt GroupO43402
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
NicalinJ [auth A]563Homo sapiensMutation(s): 0 
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Find proteins for Q969V3 (Homo sapiens)
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PHAROS:  Q969V3
GTEx:  ENSG00000125912 
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UniProt GroupQ969V3
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
BOS complex subunit NOMO2K [auth B]1,267Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q5JPE7 (Homo sapiens)
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GTEx:  ENSG00000185164 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Transmembrane protein 147L [auth C]224Homo sapiensMutation(s): 0 
Gene Names: TMEM147
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BVK8 (Homo sapiens)
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PHAROS:  Q9BVK8
GTEx:  ENSG00000105677 
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Oligosaccharides

Help

Entity ID: 13
MoleculeChains Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseM [auth D],
N [auth E]
2N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT
GlyCosmos:  G42666HT
GlyGen:  G42666HT
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download Ideal Coordinates CCD File 
O [auth 1],
P [auth 1]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.2.1
MODEL REFINEMENTPHENIX1.21-5207-000

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesDP2 GM137412
Heritage Medical Research InstituteUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-21
    Type: Initial release
  • Version 1.1: 2024-09-04
    Changes: Data collection, Database references