Structural basis of vitamin K dependent gamma-carboxylation
Cao, Q., Liu, B., Li, W.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Vitamin K-dependent gamma-carboxylase | 732 | Homo sapiens | Mutation(s): 0 Gene Names: GGCX, GC EC: 4.1.1.90 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P38435 (Homo sapiens) Explore P38435 Go to UniProtKB: P38435 | |||||
PHAROS: P38435 GTEx: ENSG00000115486 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P38435 | ||||
Glycosylation | |||||
Glycosylation Sites: 3 | Go to GlyGen: P38435-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Activation peptide | B [auth P] | 70 | Homo sapiens | Mutation(s): 0 Gene Names: PROC EC: 3.4.21.69 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04070 (Homo sapiens) Explore P04070 Go to UniProtKB: P04070 | |||||
PHAROS: P04070 GTEx: ENSG00000115718 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04070 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
6PL (Subject of Investigation/LOI) Query on 6PL | G [auth A], H [auth A] | (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE C42 H85 N O8 P PZNPLUBHRSSFHT-RRHRGVEJSA-O | |||
A1AVC (Subject of Investigation/LOI) Query on A1AVC | F [auth A] | vitamin K1 hydroquinone C31 H48 O2 BUFJIHPUGZHTHL-NKFFZRIASA-N | |||
NAG Query on NAG | I [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | 1.21.1_5286: |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) | United States | HL121718 |
American Heart Association | United States | Established Investigator Award |
American Heart Association | United States | Collaborative Sciences Award |
W. M. Keck Foundation | United States | Forefront of Science Award |
Childrens Discovery Institute of Washington University and St. Louis Childrens Hospital | United States | MCII 2020-854 |
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | AI158500 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM131008 |