9ZVZ | pdb_00009zvz

SARS-CoV-2 S 2P with C-terminal 3X oP3h motif (RINEIER) - local refinement

PDB DOI: https://doi.org/10.2210/pdb9ZVZ/pdb
EM Map EMD-74897: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): SARS-CoV-2 pseudovirus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2025-12-31 Released: 2026-11-04
Deposition Author(s): McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9ZVZ

This is version 1.0 of the entry. See complete history.

Literature

Prefusion- stabilization of the Herpesvirus fusion protein enhances vaccine potency

McCallum, M., Veesler, D.

To be published.

Macromolecule Content

Total Structure Weight: 398.76 kDa
Atom Count: 498
Modeled Residue Count: 66
Deposited Residue Count: 3,603
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike glycoprotein	A, B, C	1,201	SARS-CoV-2 pseudovirus	Mutation(s): 0 Gene Names: S, 2
UniProt
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC2 Go to UniProtKB: P0DTC2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0DTC2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-11-04

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	--

Revision History (Full details and data files)

Version 1.0: 2026-11-04
Type: Initial release