9ZN5 | pdb_00009zn5

Hybrid model of a dimer of BrxC-BrxB fusion complexed with PglZ from the Acinetobacter BREX system


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 9ZN5

This is version 1.1 of the entry. See complete history

Literature

Competing forms of protein-protein association and DNA binding exhibited by BrxC from the BREX phage restriction system.

Kaiser, A.J.Readshaw, J.J.Doyle, L.A.Puiu, M.Kelly, A.McGuire, S.F.Peralta Acosta, J.Vu, D.Nelson, A.Smith, D.L.Araujo-Bazan, L.Arias-Palomo, E.Luyten, Y.A.Stoddard, B.L.Blower, T.R.Kaiser, B.K.

(2026) bioRxiv 

  • DOI: https://doi.org/10.64898/2026.04.09.717308
  • Primary Citation Related Structures: 
    9ZN5

  • PubMed Abstract: 

    Bacteriophage exclusion (BREX) defense systems restrict phage infection via inhibition of phage DNA replication, while also modifying and protecting the bacterial genome. Type I BREX systems encode six conserved proteins, including a site-specific DNA methyltransferase. Host methylation requires a subset of BREX proteins, whereas phage restriction generally requires them all, suggesting that distinct but overlapping complexes mediate these activities. Full details of the mechanism and regulation of BREX remains to be understood. Here, we characterize the behavior and structures of the conserved BrxC AAA+ ATPase protein. BrxC forms multiple competing assemblages - various self-associating multimers, as well as a complex with BrxB-PglZ - that can be uncoupled via distinct point mutations, leading to differing effects on host methylation versus phage restriction. BrxC's self-association, as well as its ability to bind DNA, is regulated by ATP binding and hydrolysis; BrxA and BrxB appear to also regulate those behaviors. These collective results suggest that BrxC may play a key role in controlling the two activities of BREX, with BrxB, BrxC and PglZ forming a core complex, and the equilibrium among competing assemblies containing those proteins modulating the balance between idling and activated restrictive states.


  • Organizational Affiliation
    • Division of Basic Sciences, Fred Hutchinson Cancer Center, 1100 Fairview Ave. N. Seattle WA 98109 USA.

Macromolecule Content 

  • Total Structure Weight: 371.1 kDa 
  • Atom Count: 26,154 
  • Modeled Residue Count: 3,266 
  • Deposited Residue Count: 3,266 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
BrxC-BrxB
A, C
754Acinetobacter sp. NEB 394Mutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
PglZ
B, D
879Acinetobacter sp. NEB 394Mutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.5.3

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States5R35 GM148166
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR15 GM140375
New England BiolabsUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2026-04-08
    Type: Initial release
  • Version 1.1: 2026-05-06
    Changes: Data collection, Database references