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 9Z5H | pdb_00009z5h

Crystal structure of MPXV-B6-Stalk in complex with antibody B6-Ab6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 
    0.269 (Depositor), 0.265 (DCC) 
  • R-Value Work: 
    0.235 (Depositor), 0.234 (DCC) 
  • R-Value Observed: 
    0.238 (Depositor) 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Validation slider image for 9Z5H

This is version 1.0 of the entry. See complete history. 

Literature

Antibodies to distinct epitopes on MPXV enveloped virion provide additive and complete protection.

Zhang, D., Fantin, R.F., Zhu, X., Feng, Z., Park, S.C., Laghlali, G., Clark, J.J., Nobrega, G.M., Kottkamp, A.C., Samanovic, M.I., Mulligan, M.J., Lim, J.K., Schotsaert, M., Yuan, M., Coelho, C.H., Wilson, I.A.

(2026) Sci Immunol 11: eaee7011-eaee7011

  • DOI: https://doi.org/10.1126/sciimmunol.aee7011
  • Primary Citation Related Structures: 
    9Z4P, 9Z56, 9Z57, 9Z58, 9Z59, 9Z5A, 9Z5B, 9Z5C, 9Z5D, 9Z5E, 9Z5F, 9Z5G, 9Z5H

  • PubMed Abstract: 

    The continuing evolution of monkeypox virus (MPXV) clades capable of sustained human-to-human transmission poses an escalating global health risk, yet no effective therapy exists for poxvirus infection. Here, we investigate a panel of human monoclonal antibodies (mAbs), derived from an antibody library, which targets A35 and B6 antigens located on the extracellular enveloped virion (EV). Four high-affinity mAbs target the central groove of the A35 dimer, whereas one targets a previously unidentified epitope on the A35 protruding loop. Three other mAbs recognize distinct, previously unmapped epitopes on the multidomain B6 antigen. Those epitopes are conserved across most orthopoxviruses. A combination of an anti-A35 and an anti-B6 antibody provides additive and complete protection from both morbidity and mortality in a lethal VACV mouse model, challenging the previous assumption that targeting both the EV and mature virion (MV) forms is required for full protection. These studies uncover critical information for next-generation therapeutics and vaccines against emerging MPXV as well as other Orthopoxvirus threats.


  • Organizational Affiliation: 
    • Department of Integrative Structural and Computational Biology, Scripps Research Institute, La Jolla, CA, USA.

Macromolecule Content 

  • Total Structure Weight: 98.37 kDa 
  • Atom Count: 6,613 
  • Modeled Residue Count: 886 
  • Deposited Residue Count: 923 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
antibody B6-Ab6 heavy chain
A, C
224Homo sapiensMutation(s): 0 
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
antibody B6-Ab6 light chain
B, D
216Homo sapiensMutation(s): 0 
Entity Groups
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein OPG190E [auth X]43Monkeypox virusMutation(s): 0 
Gene Names: OPG190, PS/HR, MPXVgp167
UniProt
Find proteins for P0DTN2 (Monkeypox virus)
Explore P0DTN2 
Go to UniProtKB:  P0DTN2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DTN2
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NHE

Query on NHE



Download:Ideal Coordinates CCD File
F [auth C]2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
C8 H17 N O3 S
MKWKNSIESPFAQN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free:  0.269 (Depositor), 0.265 (DCC) 
  • R-Value Work:  0.235 (Depositor), 0.234 (DCC) 
  • R-Value Observed: 0.238 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 60.598α = 90
b = 123.018β = 100.23
c = 70.373γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction
PHENIXphasing
PDB_EXTRACTdata extraction

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2026-11-11
    Type: Initial release