9YS3 | pdb_00009ys3

Deposited: 2025-10-17 Released: 2026-06-17
Deposition Author(s): Karki, P., Stojkovic, E.A., Schmidt, M.
Funding Organization(s): National Science Foundation (NSF, United States), Simons Foundation, National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Karki, P., Schmidt, M.

To be published.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bacteriophytochrome	A, B	739	Stigmatella aurantiaca	Mutation(s): 0 Gene Names: SAMN05444354_11920 EC: 2.7.13.3
UniProt
Find proteins for A0A1H7ZJA8 (Stigmatella aurantiaca) Explore A0A1H7ZJA8 Go to UniProtKB: A0A1H7ZJA8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1H7ZJA8
Sequence Annotations Expand
Reference Sequence

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
BLA (Subject of Investigation/LOI) Query on BLA Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth B]	C [auth A], D [auth B]	BILIVERDINE IX ALPHA C₃₃ H₃₄ N₄ O₆ GWZYPXHJIZCRAJ-SRVCBVSDSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21.2_5419
RECONSTRUCTION	cryoSPARC	v4.7.1

& Funding Information

Deposition Author(s):

Karki, P.

Funding Organization	Location	Grant Number
National Science Foundation (NSF, United States)	United States	--
Simons Foundation	United States	--
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--