9XJ8 | pdb_00009xj8

Cryo-EM structure of Hsp90(E47A)-FKBP8 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.09 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9XJ8

This is version 1.0 of the entry. See complete history

Literature

FKBP8 connects the Hsp70-Hsp90 chaperone machinery to the folding of membrane proteins.

Ge, M.X.Wu, M.Z.Ji, J.Li, Z.P.Bai, Z.He, J.Chuh, J.Zhang, Y.Li, J.Zhang, Z.R.

(2026) Nat Commun 

  • DOI: https://doi.org/10.1038/s41467-026-74519-6
  • Primary Citation Related Structures: 
    9XJ8

  • PubMed Abstract: 

    The folding of membrane protein cytoplasmic domains on the endoplasmic reticulum (ER) surface, and their coordination with transmembrane and exoplasmic regions, remains poorly understood. Through a genome-wide CRISPR-Cas9 screen, we identified the ER-anchored FK506 binding protein 8 (FKBP8) as a chaperone essential for membrane protein folding and assembly. Using ABC transporters as model substrates, we show that FKBP8 cooperates with Hsp70-Hsp90 machinery to remodel nascent or misfolded cytosolic domains into their native conformations. Cryo-EM analysis reveals that FKBP8 employs a conserved hydrophobic ϕ 94 ϕ 96 ϕ 97 158 ϕ 162 cluster to help form a large client-binding cavity within the FKBP8-Hsp90 complex that captures folding intermediates. FKBP8 deficiency, disruption of this cluster, or disease-associated mutations within FKBP8 abolish substrate maturation, leading to ER retention and degradation. Reconstitution with purified components demonstrates that FKBP8 and Hsp40-Hsp70-HOP-Hsp90 constitute a minimal machinery capable of restoring the native structure of a misfolded ABC transporter. These findings uncover a dedicated folding module at the ER-cytosol interface that bridges cytosolic chaperones with membrane protein quality control, suggesting a broad role for FKBP8 in safeguarding the biogenesis of complex membrane proteins.


  • Organizational Affiliation
    • Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, China.

Macromolecule Content 

  • Total Structure Weight: 201.27 kDa 
  • Atom Count: 12,687 
  • Modeled Residue Count: 1,568 
  • Deposited Residue Count: 1,745 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Heat shock protein HSP 90-alpha
A, B
732Homo sapiensMutation(s): 1 
Gene Names: HSP90AA1HSP90AHSPC1HSPCA
EC: 3.6.4.10
UniProt & NIH Common Fund Data Resources
Find proteins for P07900 (Homo sapiens)
Explore P07900 
Go to UniProtKB:  P07900
GTEx:  ENSG00000080824 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP07900
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Isoform 2 of Peptidyl-prolyl cis-trans isomerase FKBP8C [auth E]281Homo sapiensMutation(s): 0 
Gene Names: FKBP8FKBP38
EC: 5.2.1.8
UniProt & NIH Common Fund Data Resources
Find proteins for Q14318 (Homo sapiens)
Go to UniProtKB:  Q14318
GTEx:  ENSG00000105701 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ14318-2
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.09 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2022ZD0207400
National Natural Science Foundation of China (NSFC)China32570911
National Natural Science Foundation of China (NSFC)China32270824

Revision History  (Full details and data files)

  • Version 1.0: 2026-08-19
    Type: Initial release