9XDC | pdb_00009xdc

TamAB hybrid barrel state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.69 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9XDC

This is version 1.1 of the entry. See complete history

Literature

Structural basis of outer membrane biogenesis by the TamAB translocase.

Yang, B.Fan, R.Batista, M.B.Chen, Y.Duan, X.Wang, R.Li, D.Stansfeld, P.J.Zhang, Z.Dong, C.

(2026) Nat Commun 17: 437-437

  • DOI: https://doi.org/10.1038/s41467-025-67115-7
  • Primary Citation Related Structures: 
    9XDC, 9XDD

  • PubMed Abstract: 

    The outer membrane is vital for Gram-negative bacteria, playing crucial roles in colonization, pathogenesis and drug resistance. The translocation and assembly module A and B (TamAB) nanomachinery has been reported to be involved in transport of phospholipids from the inner membrane to the outer membrane, as well as insertion of critical outer membrane proteins. However, the underlying mechanisms remain poorly understood. Here we report cryogenic electron microscopy structures of TamAB in two conformations at resolutions of 3.69 and 3.82 Å. We reveal a hybrid barrel structure formed between the first β-strand of the TamA barrel and the last β-strand of the TamB C-terminal domain, which is folded inside the β-barrel. By integrating structural analysis with functional data, biochemical assays, and molecular dynamics simulations, we identify key residues involved in TamAB interactions and characterize the mechanisms of anterograde phospholipid transport within the continuously beta-helical hydrophobic cavity of TamB. Through disulfide bond crosslinking and functional assays, we reveal that TamA crosslinks with both TamB and Ag43. Additionally, we confirm that the two cryo-EM conformational states of TamAB exist in vivo. While BAM overexpression can compensate for TamAB deletion in Ag43 insertion, it does not rescue phospholipid transport. Given that TamA and TamB orthologs are widely distributed in among bacterial and eukaryotic organisms, our findings have broad implications in cell envelope biogenesis and offer potential avenues for therapeutic development through inhibition.


  • Organizational Affiliation
    • Department of Thyroid and Breast Surgery, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, China.

Macromolecule Content 

  • Total Structure Weight: 201.75 kDa 
  • Atom Count: 6,763 
  • Modeled Residue Count: 888 
  • Deposited Residue Count: 1,836 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Translocation and assembly module subunit TamA577Escherichia coli str. K-12 substr. MG1655starMutation(s): 0 
Gene Names: tamAyftMytfMb4220JW4179
UniProt
Find proteins for P0ADE4 (Escherichia coli (strain K12))
Explore P0ADE4 
Go to UniProtKB:  P0ADE4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0ADE4
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Translocation and assembly module subunit TamB1,259Escherichia coli str. K-12 substr. MG1655starMutation(s): 0 
Gene Names: tamBytfNytfOb4221JW4180
UniProt
Find proteins for P39321 (Escherichia coli (strain K12))
Explore P39321 
Go to UniProtKB:  P39321
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39321
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.69 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487
RECONSTRUCTIONcryoSPARC4.5.3

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2026-01-28
    Type: Initial release
  • Version 1.1: 2026-02-18
    Changes: Data collection, Database references