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 9XCA | pdb_00009xca

CryoEM structure of the G6PT dimer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.27 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9XCA

This is version 1.1 of the entry. See complete history. 

Literature

Structures of the human glucose-6-phosphate transporter provide insights into its transport cycle and substrate recognition.

Zhang, W., Jiao, H., Xue, J., Zhou, J., Wang, Y., Pan, Q., Guo, Y., Zhang, G., Hu, H., Guo, X.

(2026) PLoS Biol 24: e3003731-e3003731

  • DOI: https://doi.org/10.1371/journal.pbio.3003731
  • Primary Citation Related Structures: 
    9XCA, 9XCB

  • PubMed Abstract: 

    The human glucose-6-phosphate transporter (G6PT/SLC37A4) mediates the translocation of glucose-6-phosphate (G6P) from the cytoplasm into the endoplasmic reticulum, a process essential for glucose production and the maintenance of blood glucose homeostasis between meals. Dysfunction of G6PT causes glycogen storage disease type Ib (GSD-Ib), a severe metabolic disorder characterized by hypoglycemia, hepatomegaly, and neutropenia. Despite its physiological and clinical significance, the structural basis of G6P recognition and the molecular mechanisms underlying GSD-Ib have remained elusive. Here, we present cryo-electron microscopy structures of human G6PT, revealing a monomer in an outward-open state at 3.1 Å and a homodimeric assembly in a face-to-face topology at 3.3 Å. By combining computational modeling of the G6P-G6PT complexes with functional characterization, we have uncovered the key molecular elements that govern the alternating-access mechanism: an electropositive substrate-binding pocket tailored for phosphorylated sugars; conserved aromatic residues that seal the cytosolic gate; and a dynamic inter-domain salt bridge that regulates the conformational transition. Our work provides fundamental insights into the transport cycle of the organophosphate:phosphate antiporter (OPA) family, offers a framework for interpreting GSD-Ib pathology at the molecular level, and establishes a foundation for advancing the mechanistic understanding of the human SLC37 family.


  • Organizational Affiliation: 
    • Kobilka Institute of Innovative Drug Discovery, Department of Biological Sciences, Division of Biomedical Health Sciences, School of Medicine, The Chinese University of Hong Kong, Shenzhen, Guangdong, China.

Macromolecule Content 

  • Total Structure Weight: 100.06 kDa 
  • Atom Count: 6,360 
  • Modeled Residue Count: 814 
  • Deposited Residue Count: 904 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Glucose-6-phosphate exchanger SLC37A4A [auth B],
B [auth C]
452Homo sapiensMutation(s): 0 
Gene Names: SLC37A4, G6PT, G6PT1, PRO0685, TRG19
UniProt & NIH Common Fund Data Resources
Find proteins for O43826 (Homo sapiens)
Explore O43826 
Go to UniProtKB:  O43826
PHAROS:  O43826
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO43826
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.27 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other government--

Revision History  (Full details and data files)

  • Version 1.0: 2026-03-18
    Type: Initial release
  • Version 1.1: 2026-09-30
    Changes: Data collection, Database references