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 9WTW | pdb_00009wtw

Amyloid-beta 40 Flemish (A21G) mutant Filaments from Human Brain


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.98 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report

Validation slider image for 9WTW

This is version 1.2 of the entry. See complete history. 

Literature

Distinct amyloid-beta filament fold in individuals with APP Flemish mutation.

Khaki, P.S.S., Guillen-Poza, P.A., Wong, C., Kan, C., Sharma, R., Sugimura, R., Robinson, A.C., Valbuena, A., Ng, R.C., Yang, Y., Hervas, R.

(2026) Nat Struct Mol Biol 33: 1194-1203

  • DOI: https://doi.org/10.1038/s41594-026-01855-y
  • Primary Citation Related Structures: 
    9WTW

  • PubMed Abstract: 

    The dominantly inherited Flemish mutation-an A692G substitution in the amyloid precursor protein, corresponding to an A21G change in amyloid-β (Aβ)-causes a rare, early-onset form of Alzheimer disease characterized by pronounced cerebral amyloid angiopathy and unusually large senile plaque cores. Here, we report cryo-electron microscopy structures of amyloid filaments extracted from the postmortem parietal lobes of two individuals representing the only two known Flemish pedigrees worldwide. Although tau paired helical filaments were present, the predominant filaments comprise Aβ40-A21G, assembled as two identical protofilaments (D1-V40) packed with two-start helical symmetry. Aβ40-A21G and wild-type Aβ42 filaments share a substructure preceding the substitution site (Y10-F19); however, loss of the methyl group at residue 21 gives rise to a distinct arrangement, termed the 'Flemish fold', which differs from all previously characterized Aβ folds and is defined by a unique hydrophobic interface. Using a cell-based assay, we find that this distinctive fold is associated with the vascular tropism characteristic of the Flemish variant. Together, our structural and cellular data define a familial Alzheimer-disease-associated amyloid fold and provide insight into the molecular basis of Flemish-type dementia and cerebral hemorrhage.


  • Organizational Affiliation: 
    • School of Biomedical Sciences, The University of Hong Kong, Pok Fu Lam, Hong Kong.

Macromolecule Content 

  • Total Structure Weight: 43.22 kDa 
  • Atom Count: 3,090 
  • Modeled Residue Count: 400 
  • Deposited Residue Count: 400 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Amyloid-beta protein 4040Homo sapiensMutation(s): 1 
UniProt & NIH Common Fund Data Resources
Find proteins for P05067 (Homo sapiens)
Explore P05067 
Go to UniProtKB:  P05067
PHAROS:  P05067
GTEx:  ENSG00000142192 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05067
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.98 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION5.0

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentHong Kong--

Revision History  (Full details and data files)

  • Version 1.0: 2026-08-05
    Type: Initial release
  • Version 1.1: 2026-08-19
    Changes: Data collection, Database references
  • Version 1.2: 2026-08-26
    Changes: Data collection, Database references