9WPE | pdb_00009wpe

Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex bound with nepetalactone in the closed state.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9WPE

This is version 1.0 of the entry. See complete history

Literature

Structural basis of sex pheromone detection in aphids.

Dong, Z.Wang, Y.Tian, Y.Guan, Z.Bai, M.Zhang, B.Jia, Z.Wu, J.Cao, S.Gong, Z.Zhao, X.Ma, W.Wang, B.Wang, G.Yin, P.

(2026) Cell Res 36: 582-594

  • DOI: https://doi.org/10.1038/s41422-026-01267-z
  • Primary Citation Related Structures: 
    9WPE

  • PubMed Abstract: 

    Sex pheromones play a central role in regulating animal behavior and reproduction. In insects, these signals are perceived through specialized odorant receptors (ORs) that mediate species-specific communication and safeguard genetic integrity. However, the structural basis of sex pheromone detection remains largely unresolved. Here, we identified two ORs in the pea aphid Acyrthosiphon pisum, along with the conserved OR co-receptor (Orco), which together mediate recognition of the pheromone components nepetalactone and nepetalactol. Functional assays demonstrated that ApOR21-Orco and ApOR22-Orco specifically respond to nepetalactol and nepetalactone, respectively. Using cryo-electron microscopy, we resolved the structure of the ApOR22-Orco complex in three states - unbound closed, nepetalactone-bound closed, and nepetalactone-bound open - revealing a heterotetrameric ion channel formed by one ApOR22 and three ApOrco subunits. Ligand binding to ApOR22 triggers conformational rearrangements that induce asymmetric pore dilation, thereby enabling ion conduction. Together, these results provide a mechanistic framework for understanding sex pheromone perception in insects and establish a structural foundation for the rational development of environmentally sustainable pest-control strategies.


  • Organizational Affiliation
    • National Key Laboratory of Crop Genetic Improvement, College of Bio-X, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, Hubei, China.

Macromolecule Content 

  • Total Structure Weight: 214.16 kDa 
  • Atom Count: 12,755 
  • Modeled Residue Count: 1,536 
  • Deposited Residue Count: 1,834 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Odorant receptor445Acyrthosiphon pisumMutation(s): 0 
UniProt
Find proteins for A0A8R2JM50 (Acyrthosiphon pisum)
Explore A0A8R2JM50 
Go to UniProtKB:  A0A8R2JM50
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8R2JM50
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Odorant receptor
B, C, D
463Acyrthosiphon pisumMutation(s): 0 
Gene Names: Orco
UniProt
Find proteins for A0A1S6J137 (Acyrthosiphon pisum)
Explore A0A1S6J137 
Go to UniProtKB:  A0A1S6J137
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1S6J137
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PC1
(Subject of Investigation/LOI)

Query on PC1



Download:Ideal Coordinates CCD File
F [auth A]
G [auth B]
H [auth B]
I [auth B]
J [auth C]
F [auth A],
G [auth B],
H [auth B],
I [auth B],
J [auth C],
K [auth D]
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C44 H88 N O8 P
NRJAVPSFFCBXDT-HUESYALOSA-N
A1EX6(
Subject of Investigation/LOI)

Query on A1EX6



Download:Ideal Coordinates CCD File
E [auth A](4~{a}~{S},7~{S},7~{a}~{R})-4,7-dimethyl-5,6,7,7~{a}-tetrahydro-4~{a}~{H}-cyclopenta[c]pyran-1-one
C10 H14 O2
ZDKZHVNKFOXMND-NBEYISGCSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2026-08-26
    Type: Initial release