9VJI | pdb_00009vji

Cryo-EM structure of apo UL9 complex

PDB DOI: https://doi.org/10.2210/pdb9VJI/pdb
EM Map EMD-65114: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Human alphaherpesvirus 1 strain 17
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2025-06-20 Released: 2026-06-24
Deposition Author(s): Ma, J., Zhang, X., Huang, C.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9VJI

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of UL9-DNA complex

Ma, J., Zhang, X., Huang, C.

To be published.

Macromolecule Content

Total Structure Weight: 194.66 kDa
Atom Count: 11,226
Modeled Residue Count: 1,432
Deposited Residue Count: 1,760
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Replication origin-binding protein	A, B	880	Human alphaherpesvirus 1 strain 17	Mutation(s): 0 Gene Names: UL9
UniProt
Find proteins for P10193 (Human herpesvirus 1 (strain 17)) Explore P10193 Go to UniProtKB: P10193
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P10193
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487
RECONSTRUCTION	RELION

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-06-24

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2026-06-24
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.