9UB0 | pdb_00009ub0

effector of a plant pathogen


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

Necrosis-Suppressing Effector Protein ChEC88 Adopts a Novel Structural Motif Conserved Among Genus-Spanning Hemibiotrophic Phytopathogens.

Ohki, S.Takahara, H.Imamura, T.Sakane, K.Bai, A.Sasaki, K.Nishiuchi, T.Mori, M.

(2025) Plants (Basel) 14

  • DOI: https://doi.org/10.3390/plants14162562
  • Primary Citation Related Structures: 
    9UB0

  • PubMed Abstract: 

    Phytopathogenic fungi secrete numerous effector proteins to disrupt plant defenses. At present, their sequence-structure-function relationships remain poorly understood owing to their diversity. Comprehensive understanding of conserved effectors is necessary to elucidate the molecular relationship between fungi and plants. To fill this research gap, we investigated the Colletotrichum higginsianum effector candidate (ChEC)-88 specifically expressed during infection. Notably, similar to the biotrophy-associated secreted protein 3 (BAS3) from Pyricularia oryzae , ChEC88 inhibited plant cell death caused by necrosis- and ethylene-inducing peptide 1-like protein (NLP1). Nuclear magnetic resonance analysis results revealed that ChEC88 adopted a novel pseudo two-fold symmetrical three-dimensional structure. Homology modeling suggested that BAS3 exhibited a ChEC88-like conformation despite sharing less than 50% sequence identity. Through PSI-BLAST searches, we found that ChEC88 homologs were conserved in various hemibiotrophic phytopathogenic fungi, including Colletotrichum , P. oryzae , and Fusarium species. Functional assays demonstrated that all of the representative homologs suppressed NLP1-induced plant cell death. Mutation experiments identified the residues critical for ChEC88 function. Overall, our findings suggest that hemibiotrophic phytopathogenic fungi share a conserved immune-suppression strategy mediated by ChEC88-like proteins and that such effectors possibly originated from a common ancestral lineage of phytopathogenic fungi.


  • Organizational Affiliation
    • Center for Nano Materials and Technology (CNMT), Japan Advanced Institute of Science and Technology (JAIST), Nomi 923-1292, Ishikawa, Japan.

Macromolecule Content 

  • Total Structure Weight: 8.21 kDa 
  • Atom Count: 565 
  • Modeled Residue Count: 78 
  • Deposited Residue Count: 78 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
EC88 protein78Colletotrichum higginsianumMutation(s): 0 
Gene Names: EC88CH35J_011169
UniProt
Find proteins for K7N7H0 (Colletotrichum higginsianum)
Explore K7N7H0 
Go to UniProtKB:  K7N7H0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupK7N7H0
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan20K06049
Japan Society for the Promotion of Science (JSPS)Japan21H05032

Revision History  (Full details and data files)

  • Version 1.0: 2026-02-04
    Type: Initial release