Skip to main content

 9U05 | pdb_00009u05

1B8 (Fab) - Polio 2 (VLP) complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental, in silico
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 9U05

This is version 1.0 of the entry. See complete history. 

Literature

1B8 (Fab) - Polio 2 (VLP) complex

Bahar, M.W., Stonehouse, N.J., Rowlands, D.J., Fry, E.E., Stuart, D.I.

To be published.

Macromolecule Content 

  • Total Structure Weight: 173.51 kDa 
  • Atom Count: 8,200 
  • Modeled Residue Count: 983 
  • Deposited Residue Count: 1,585 
  • Unique protein chains: 5

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Genome polyprotein301Poliovirus 2Mutation(s): 3 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Capsid protein VP0340Poliovirus 2Mutation(s): 0 
UniProt
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
Explore P06210 
Go to UniProtKB:  P06210
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP06210
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Genome polyprotein238Poliovirus 2Mutation(s): 2 
UniProt
Find proteins for A0A0K1U2R1 (Poliovirus 2)
Explore A0A0K1U2R1 
Go to UniProtKB:  A0A0K1U2R1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0K1U2R1
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
1B8 Fab Heavy chainD [auth H]471Homo sapiensMutation(s): 0 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
1B8 Fab Light chainE [auth L]235Homo sapiensMutation(s): 0 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PLM
(Subject of Investigation/LOI)

Query on PLM



Download:Ideal Coordinates CCD File
F [auth A]PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419
RECONSTRUCTIONcryoSPARC4.3.1

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Bill & Melinda Gates FoundationUnited StatesRG.IMCB.I8-TSA-083

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-30
    Type: Initial release