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 9TTP | pdb_00009ttp

Human condensin II bound to DNA


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9TTP

This is version 1.0 of the entry. See complete history. 

Literature

Cryo-EM and single molecule visualization unravel the role of human condensin II activation by M18BP1 in driving DNA compaction

Borsellini, A., Vannini, A.

To be published.

Macromolecule Content 

  • Total Structure Weight: 547.48 kDa 
  • Atom Count: 21,172 
  • Modeled Residue Count: 2,497 
  • Deposited Residue Count: 4,672 
  • Unique protein chains: 4
  • Unique nucleic acid chains: 2

Macromolecules


Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Structural maintenance of chromosomes protein 21,197Homo sapiensMutation(s): 0 
Gene Names: SMC2, CAPE, SMC2L1, PRO0324
UniProt & NIH Common Fund Data Resources
Find proteins for O95347 (Homo sapiens)
Explore O95347 
Go to UniProtKB:  O95347
PHAROS:  O95347
GTEx:  ENSG00000136824 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO95347
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Structural maintenance of chromosomes protein 41,288Homo sapiensMutation(s): 0 
Gene Names: SMC4, CAPC, SMC4L1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NTJ3 (Homo sapiens)
Explore Q9NTJ3 
Go to UniProtKB:  Q9NTJ3
PHAROS:  Q9NTJ3
GTEx:  ENSG00000113810 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NTJ3
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Condensin-2 complex subunit D3C [auth D]1,498Homo sapiensMutation(s): 0 
Gene Names: NCAPD3, CAPD3, KIAA0056
UniProt & NIH Common Fund Data Resources
Find proteins for P42695 (Homo sapiens)
Explore P42695 
Go to UniProtKB:  P42695
PHAROS:  P42695
GTEx:  ENSG00000151503 
Entity Groups
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UniProt GroupP42695
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Condensin-2 complex subunit H2D [auth H]605Homo sapiensMutation(s): 0 
Gene Names: NCAPH2, CAPH2
UniProt & NIH Common Fund Data Resources
Find proteins for Q6IBW4 (Homo sapiens)
Explore Q6IBW4 
Go to UniProtKB:  Q6IBW4
PHAROS:  Q6IBW4
GTEx:  ENSG00000025770 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6IBW4
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Reference Sequence
Find similar nucleic acids by:  (by identity cutoff) 
Entity ID: 5
MoleculeChains LengthOrganismImage
DNA (primer)E [auth P]42DNA molecule
Sequence Annotations
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Reference Sequence
Find similar nucleic acids by:  (by identity cutoff) 
Entity ID: 6
MoleculeChains LengthOrganismImage
DNA (template)F [auth T]42DNA molecule
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other private--

Revision History  (Full details and data files)

  • Version 1.0: 2026-10-14
    Type: Initial release