9TLB | pdb_00009tlb

Cryo-EM Structure of the oligomeric LPOR:Chlide:NADPH Complexes RF-23

PDB DOI: https://doi.org/10.2210/pdb9TLB/pdb
EM Map EMD-56048: EMDB EMDataResource

Classification: PHOTOSYNTHESIS
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2025-12-10 Released: 2026-08-26
Deposition Author(s): Gabruk, M., Desfosses, A., Estrozi, L.F., Pintscher, S., Rawski, M.
Funding Organization(s): Polish National Science Centre

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: HELICAL ARRAY
Reconstruction Method: HELICAL

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 9TLB

This is version 1.0 of the entry. See complete history.

Literature

Structures of LPOR-Chlide complexes reveal the structural basis of membrane remodeling and photocatalysis

Gabruk, M., Desfosses, A., Estrozi, L.F., Pintscher, S., Rawski, M., Wazny, G., Garbacz, A., Zbyradowski, M., Kruk, J., Fiedor, L.

(2026) Nat Commun

DOI: https://doi.org/10.1038/s41467-026-76316-7

Macromolecule Content

Total Structure Weight: 1,776.89 kDa
Atom Count: 111,980
Modeled Residue Count: 13,948
Deposited Residue Count: 15,532
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protochlorophyllide reductase B, chloroplastic	A [auth YI] AA [auth ZI] B [auth YJ] BA [auth ZJ] C [auth YK] A [auth YI], AA [auth ZI], B [auth YJ], BA [auth ZJ], C [auth YK], CA [auth ZK], D [auth YL], DA [auth ZL], E [auth YM], EA [auth ZM], F [auth YN], FA [auth ZN], G [auth YO], GA [auth ZO], H [auth YP], HA [auth ZP], I [auth YQ], IA [auth ZQ], J [auth YR], JA [auth ZR], K [auth YS], KA [auth ZS], L [auth YT], LA [auth ZT], M [auth YU], MA [auth ZU], N [auth YV], NA [auth ZV], O [auth YW], OA [auth ZW], P [auth YX], PA [auth ZX], Q [auth YY], QA [auth ZY], R [auth YZ], RA [auth ZZ], S [auth ZA], T [auth ZB], U [auth ZC], V [auth ZD], W [auth ZE], X [auth ZF], Y [auth ZG], Z [auth ZH]	353	Arabidopsis thaliana	Mutation(s): 0 Gene Names: PORB, At4g27440, F27G19.40 EC: 1.3.1.33
UniProt
Find proteins for P21218 (Arabidopsis thaliana) Explore P21218 Go to UniProtKB: P21218
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P21218
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
LMG (Subject of Investigation/LOI) Query on LMG Download:Ideal Coordinates CCD File SDF format, chain ZD [auth ZK] SDF format, chain ZA [auth YK] SDF format, chain YC [auth ZB] SDF format, chain XE [auth ZS] SDF format, chain XB [auth YS] SDF format, chain WD [auth ZJ] SDF format, chain WA [auth YJ] SDF format, chain VC [auth ZA] SDF format, chain UE [auth ZR] SDF format, chain UB [auth YR] SDF format, chain TD [auth ZI] SDF format, chain TA [auth YI] SDF format, chain SF [auth ZZ] SDF format, chain SC [auth YZ] SDF format, chain RE [auth ZQ] SDF format, chain RB [auth YQ] SDF format, chain QD [auth ZH] SDF format, chain PF [auth ZY] SDF format, chain PC [auth YY] SDF format, chain OE [auth ZP] SDF format, chain OB [auth YP] SDF format, chain ND [auth ZG] SDF format, chain MF [auth ZX] SDF format, chain MC [auth YX] SDF format, chain LE [auth ZO] SDF format, chain LB [auth YO] SDF format, chain KD [auth ZF] SDF format, chain JF [auth ZW] SDF format, chain JC [auth YW] SDF format, chain IE [auth ZN] SDF format, chain IB [auth YN] SDF format, chain HD [auth ZE] SDF format, chain GF [auth ZV] SDF format, chain GC [auth YV] SDF format, chain FE [auth ZM] SDF format, chain FB [auth YM] SDF format, chain ED [auth ZD] SDF format, chain DF [auth ZU] SDF format, chain DC [auth YU] SDF format, chain CE [auth ZL] SDF format, chain CB [auth YL] SDF format, chain BD [auth ZC] SDF format, chain AF [auth ZT] SDF format, chain AC [auth YT] MOL2 format, chain ZD [auth ZK] MOL2 format, chain ZA [auth YK] MOL2 format, chain YC [auth ZB] MOL2 format, chain XE [auth ZS] MOL2 format, chain XB [auth YS] MOL2 format, chain WD [auth ZJ] MOL2 format, chain WA [auth YJ] MOL2 format, chain VC [auth ZA] MOL2 format, chain UE [auth ZR] MOL2 format, chain UB [auth YR] MOL2 format, chain TD [auth ZI] MOL2 format, chain TA [auth YI] MOL2 format, chain SF [auth ZZ] MOL2 format, chain SC [auth YZ] MOL2 format, chain RE [auth ZQ] MOL2 format, chain RB [auth YQ] MOL2 format, chain QD [auth ZH] MOL2 format, chain PF [auth ZY] MOL2 format, chain PC [auth YY] MOL2 format, chain OE [auth ZP] MOL2 format, chain OB [auth YP] MOL2 format, chain ND [auth ZG] MOL2 format, chain MF [auth ZX] MOL2 format, chain MC [auth YX] MOL2 format, chain LE [auth ZO] MOL2 format, chain LB [auth YO] MOL2 format, chain KD [auth ZF] MOL2 format, chain JF [auth ZW] MOL2 format, chain JC [auth YW] MOL2 format, chain IE [auth ZN] MOL2 format, chain IB [auth YN] MOL2 format, chain HD [auth ZE] MOL2 format, chain GF [auth ZV] MOL2 format, chain GC [auth YV] MOL2 format, chain FE [auth ZM] MOL2 format, chain FB [auth YM] MOL2 format, chain ED [auth ZD] MOL2 format, chain DF [auth ZU] MOL2 format, chain DC [auth YU] MOL2 format, chain CE [auth ZL] MOL2 format, chain CB [auth YL] MOL2 format, chain BD [auth ZC] MOL2 format, chain AF [auth ZT] MOL2 format, chain AC [auth YT] mmCIF format, chain ZD [auth ZK] mmCIF format, chain ZA [auth YK] mmCIF format, chain YC [auth ZB] mmCIF format, chain XE [auth ZS] mmCIF format, chain XB [auth YS] mmCIF format, chain WD [auth ZJ] mmCIF format, chain WA [auth YJ] mmCIF format, chain VC [auth ZA] mmCIF format, chain UE [auth ZR] mmCIF format, chain UB [auth YR] mmCIF format, chain TD [auth ZI] mmCIF format, chain TA [auth YI] mmCIF format, chain SF [auth ZZ] mmCIF format, chain SC [auth YZ] mmCIF format, chain RE [auth ZQ] mmCIF format, chain RB [auth YQ] mmCIF format, chain QD [auth ZH] mmCIF format, chain PF [auth ZY] mmCIF format, chain PC [auth YY] mmCIF format, chain OE [auth ZP] mmCIF format, chain OB [auth YP] mmCIF format, chain ND [auth ZG] mmCIF format, chain MF [auth ZX] mmCIF format, chain MC [auth YX] mmCIF format, chain LE [auth ZO] mmCIF format, chain LB [auth YO] mmCIF format, chain KD [auth ZF] mmCIF format, chain JF [auth ZW] mmCIF format, chain JC [auth YW] mmCIF format, chain IE [auth ZN] mmCIF format, chain IB [auth YN] mmCIF format, chain HD [auth ZE] mmCIF format, chain GF [auth ZV] mmCIF format, chain GC [auth YV] mmCIF format, chain FE [auth ZM] mmCIF format, chain FB [auth YM] mmCIF format, chain ED [auth ZD] mmCIF format, chain DF [auth ZU] mmCIF format, chain DC [auth YU] mmCIF format, chain CE [auth ZL] mmCIF format, chain CB [auth YL] mmCIF format, chain BD [auth ZC] mmCIF format, chain AF [auth ZT] mmCIF format, chain AC [auth YT]	AC [auth YT] AF [auth ZT] BD [auth ZC] CB [auth YL] CE [auth ZL] AC [auth YT], AF [auth ZT], BD [auth ZC], CB [auth YL], CE [auth ZL], DC [auth YU], DF [auth ZU], ED [auth ZD], FB [auth YM], FE [auth ZM], GC [auth YV], GF [auth ZV], HD [auth ZE], IB [auth YN], IE [auth ZN], JC [auth YW], JF [auth ZW], KD [auth ZF], LB [auth YO], LE [auth ZO], MC [auth YX], MF [auth ZX], ND [auth ZG], OB [auth YP], OE [auth ZP], PC [auth YY], PF [auth ZY], QD [auth ZH], RB [auth YQ], RE [auth ZQ], SC [auth YZ], SF [auth ZZ], TA [auth YI], TD [auth ZI], UB [auth YR], UE [auth ZR], VC [auth ZA], WA [auth YJ], WD [auth ZJ], XB [auth YS], XE [auth ZS], YC [auth ZB], ZA [auth YK], ZD [auth ZK]	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C₄₅ H₈₆ O₁₀ DCLTVZLYPPIIID-CVELTQQQSA-N		Interactions Focus chain AC [auth YT] Focus chain AF [auth ZT] Focus chain BD [auth ZC] Focus chain CB [auth YL] Focus chain CE [auth ZL] Focus chain DC [auth YU] Focus chain DF [auth ZU] Focus chain ED [auth ZD] Focus chain FB [auth YM] Focus chain FE [auth ZM] Focus chain GC [auth YV] Focus chain GF [auth ZV] Focus chain HD [auth ZE] Focus chain IB [auth YN] Focus chain IE [auth ZN] Focus chain JC [auth YW] Focus chain JF [auth ZW] Focus chain KD [auth ZF] Focus chain LB [auth YO] Focus chain LE [auth ZO] Focus chain MC [auth YX] Focus chain MF [auth ZX] Focus chain ND [auth ZG] Focus chain OB [auth YP] Focus chain OE [auth ZP] Focus chain PC [auth YY] Focus chain PF [auth ZY] Focus chain QD [auth ZH] Focus chain RB [auth YQ] Focus chain RE [auth ZQ] Focus chain SC [auth YZ] Focus chain SF [auth ZZ] Focus chain TA [auth YI] Focus chain TD [auth ZI] Focus chain UB [auth YR] Focus chain UE [auth ZR] Focus chain VC [auth ZA] Focus chain WA [auth YJ] Focus chain WD [auth ZJ] Focus chain XB [auth YS] Focus chain XE [auth ZS] Focus chain YC [auth ZB] Focus chain ZA [auth YK] Focus chain ZD [auth ZK] Interactions & Density Focus chain AC [auth YT] Focus chain AF [auth ZT] Focus chain BD [auth ZC] Focus chain CB [auth YL] Focus chain CE [auth ZL] Focus chain DC [auth YU] Focus chain DF [auth ZU] Focus chain ED [auth ZD] Focus chain FB [auth YM] Focus chain FE [auth ZM] Focus chain GC [auth YV] Focus chain GF [auth ZV] Focus chain HD [auth ZE] Focus chain IB [auth YN] Focus chain IE [auth ZN] Focus chain JC [auth YW] Focus chain JF [auth ZW] Focus chain KD [auth ZF] Focus chain LB [auth YO] Focus chain LE [auth ZO] Focus chain MC [auth YX] Focus chain MF [auth ZX] Focus chain ND [auth ZG] Focus chain OB [auth YP] Focus chain OE [auth ZP] Focus chain PC [auth YY] Focus chain PF [auth ZY] Focus chain QD [auth ZH] Focus chain RB [auth YQ] Focus chain RE [auth ZQ] Focus chain SC [auth YZ] Focus chain SF [auth ZZ] Focus chain TA [auth YI] Focus chain TD [auth ZI] Focus chain UB [auth YR] Focus chain UE [auth ZR] Focus chain VC [auth ZA] Focus chain WA [auth YJ] Focus chain WD [auth ZJ] Focus chain XB [auth YS] Focus chain XE [auth ZS] Focus chain YC [auth ZB] Focus chain ZA [auth YK] Focus chain ZD [auth ZK]
NDP (Subject of Investigation/LOI) Query on NDP Download:Ideal Coordinates CCD File SDF format, chain ZE [auth ZT] SDF format, chain ZB [auth YT] SDF format, chain YD [auth ZK] SDF format, chain YA [auth YK] SDF format, chain XC [auth ZB] SDF format, chain WE [auth ZS] SDF format, chain WB [auth YS] SDF format, chain VD [auth ZJ] SDF format, chain VA [auth YJ] SDF format, chain UC [auth ZA] SDF format, chain TE [auth ZR] SDF format, chain TB [auth YR] SDF format, chain SD [auth ZI] SDF format, chain SA [auth YI] SDF format, chain RF [auth ZZ] SDF format, chain RC [auth YZ] SDF format, chain QE [auth ZQ] SDF format, chain QB [auth YQ] SDF format, chain PD [auth ZH] SDF format, chain OF [auth ZY] SDF format, chain OC [auth YY] SDF format, chain NE [auth ZP] SDF format, chain NB [auth YP] SDF format, chain MD [auth ZG] SDF format, chain LF [auth ZX] SDF format, chain LC [auth YX] SDF format, chain KE [auth ZO] SDF format, chain KB [auth YO] SDF format, chain JD [auth ZF] SDF format, chain IF [auth ZW] SDF format, chain IC [auth YW] SDF format, chain HE [auth ZN] SDF format, chain HB [auth YN] SDF format, chain GD [auth ZE] SDF format, chain FF [auth ZV] SDF format, chain FC [auth YV] SDF format, chain EE [auth ZM] SDF format, chain EB [auth YM] SDF format, chain DD [auth ZD] SDF format, chain CF [auth ZU] SDF format, chain CC [auth YU] SDF format, chain BE [auth ZL] SDF format, chain BB [auth YL] SDF format, chain AD [auth ZC] MOL2 format, chain ZE [auth ZT] MOL2 format, chain ZB [auth YT] MOL2 format, chain YD [auth ZK] MOL2 format, chain YA [auth YK] MOL2 format, chain XC [auth ZB] MOL2 format, chain WE [auth ZS] MOL2 format, chain WB [auth YS] MOL2 format, chain VD [auth ZJ] MOL2 format, chain VA [auth YJ] MOL2 format, chain UC [auth ZA] MOL2 format, chain TE [auth ZR] MOL2 format, chain TB [auth YR] MOL2 format, chain SD [auth ZI] MOL2 format, chain SA [auth YI] MOL2 format, chain RF [auth ZZ] MOL2 format, chain RC [auth YZ] MOL2 format, chain QE [auth ZQ] MOL2 format, chain QB [auth YQ] MOL2 format, chain PD [auth ZH] MOL2 format, chain OF [auth ZY] MOL2 format, chain OC [auth YY] MOL2 format, chain NE [auth ZP] MOL2 format, chain NB [auth YP] MOL2 format, chain MD [auth ZG] MOL2 format, chain LF [auth ZX] MOL2 format, chain LC [auth YX] MOL2 format, chain KE [auth ZO] MOL2 format, chain KB [auth YO] MOL2 format, chain JD [auth ZF] MOL2 format, chain IF [auth ZW] MOL2 format, chain IC [auth YW] MOL2 format, chain HE [auth ZN] MOL2 format, chain HB [auth YN] MOL2 format, chain GD [auth ZE] MOL2 format, chain FF [auth ZV] MOL2 format, chain FC [auth YV] MOL2 format, chain EE [auth ZM] MOL2 format, chain EB [auth YM] MOL2 format, chain DD [auth ZD] MOL2 format, chain CF [auth ZU] MOL2 format, chain CC [auth YU] MOL2 format, chain BE [auth ZL] MOL2 format, chain BB [auth YL] MOL2 format, chain AD [auth ZC] mmCIF format, chain ZE [auth ZT] mmCIF format, chain ZB [auth YT] mmCIF format, chain YD [auth ZK] mmCIF format, chain YA [auth YK] mmCIF format, chain XC [auth ZB] mmCIF format, chain WE [auth ZS] mmCIF format, chain WB [auth YS] mmCIF format, chain VD [auth ZJ] mmCIF format, chain VA [auth YJ] mmCIF format, chain UC [auth ZA] mmCIF format, chain TE [auth ZR] mmCIF format, chain TB [auth YR] mmCIF format, chain SD [auth ZI] mmCIF format, chain SA [auth YI] mmCIF format, chain RF [auth ZZ] mmCIF format, chain RC [auth YZ] mmCIF format, chain QE [auth ZQ] mmCIF format, chain QB [auth YQ] mmCIF format, chain PD [auth ZH] mmCIF format, chain OF [auth ZY] mmCIF format, chain OC [auth YY] mmCIF format, chain NE [auth ZP] mmCIF format, chain NB [auth YP] mmCIF format, chain MD [auth ZG] mmCIF format, chain LF [auth ZX] mmCIF format, chain LC [auth YX] mmCIF format, chain KE [auth ZO] mmCIF format, chain KB [auth YO] mmCIF format, chain JD [auth ZF] mmCIF format, chain IF [auth ZW] mmCIF format, chain IC [auth YW] mmCIF format, chain HE [auth ZN] mmCIF format, chain HB [auth YN] mmCIF format, chain GD [auth ZE] mmCIF format, chain FF [auth ZV] mmCIF format, chain FC [auth YV] mmCIF format, chain EE [auth ZM] mmCIF format, chain EB [auth YM] mmCIF format, chain DD [auth ZD] mmCIF format, chain CF [auth ZU] mmCIF format, chain CC [auth YU] mmCIF format, chain BE [auth ZL] mmCIF format, chain BB [auth YL] mmCIF format, chain AD [auth ZC]	AD [auth ZC] BB [auth YL] BE [auth ZL] CC [auth YU] CF [auth ZU] AD [auth ZC], BB [auth YL], BE [auth ZL], CC [auth YU], CF [auth ZU], DD [auth ZD], EB [auth YM], EE [auth ZM], FC [auth YV], FF [auth ZV], GD [auth ZE], HB [auth YN], HE [auth ZN], IC [auth YW], IF [auth ZW], JD [auth ZF], KB [auth YO], KE [auth ZO], LC [auth YX], LF [auth ZX], MD [auth ZG], NB [auth YP], NE [auth ZP], OC [auth YY], OF [auth ZY], PD [auth ZH], QB [auth YQ], QE [auth ZQ], RC [auth YZ], RF [auth ZZ], SA [auth YI], SD [auth ZI], TB [auth YR], TE [auth ZR], UC [auth ZA], VA [auth YJ], VD [auth ZJ], WB [auth YS], WE [auth ZS], XC [auth ZB], YA [auth YK], YD [auth ZK], ZB [auth YT], ZE [auth ZT]	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₃₀ N₇ O₁₇ P₃ ACFIXJIJDZMPPO-NNYOXOHSSA-N		Interactions Focus chain AD [auth ZC] Focus chain BB [auth YL] Focus chain BE [auth ZL] Focus chain CC [auth YU] Focus chain CF [auth ZU] Focus chain DD [auth ZD] Focus chain EB [auth YM] Focus chain EE [auth ZM] Focus chain FC [auth YV] Focus chain FF [auth ZV] Focus chain GD [auth ZE] Focus chain HB [auth YN] Focus chain HE [auth ZN] Focus chain IC [auth YW] Focus chain IF [auth ZW] Focus chain JD [auth ZF] Focus chain KB [auth YO] Focus chain KE [auth ZO] Focus chain LC [auth YX] Focus chain LF [auth ZX] Focus chain MD [auth ZG] Focus chain NB [auth YP] Focus chain NE [auth ZP] Focus chain OC [auth YY] Focus chain OF [auth ZY] Focus chain PD [auth ZH] Focus chain QB [auth YQ] Focus chain QE [auth ZQ] Focus chain RC [auth YZ] Focus chain RF [auth ZZ] Focus chain SA [auth YI] Focus chain SD [auth ZI] Focus chain TB [auth YR] Focus chain TE [auth ZR] Focus chain UC [auth ZA] Focus chain VA [auth YJ] Focus chain VD [auth ZJ] Focus chain WB [auth YS] Focus chain WE [auth ZS] Focus chain XC [auth ZB] Focus chain YA [auth YK] Focus chain YD [auth ZK] Focus chain ZB [auth YT] Focus chain ZE [auth ZT] Interactions & Density Focus chain AD [auth ZC] Focus chain BB [auth YL] Focus chain BE [auth ZL] Focus chain CC [auth YU] Focus chain CF [auth ZU] Focus chain DD [auth ZD] Focus chain EB [auth YM] Focus chain EE [auth ZM] Focus chain FC [auth YV] Focus chain FF [auth ZV] Focus chain GD [auth ZE] Focus chain HB [auth YN] Focus chain HE [auth ZN] Focus chain IC [auth YW] Focus chain IF [auth ZW] Focus chain JD [auth ZF] Focus chain KB [auth YO] Focus chain KE [auth ZO] Focus chain LC [auth YX] Focus chain LF [auth ZX] Focus chain MD [auth ZG] Focus chain NB [auth YP] Focus chain NE [auth ZP] Focus chain OC [auth YY] Focus chain OF [auth ZY] Focus chain PD [auth ZH] Focus chain QB [auth YQ] Focus chain QE [auth ZQ] Focus chain RC [auth YZ] Focus chain RF [auth ZZ] Focus chain SA [auth YI] Focus chain SD [auth ZI] Focus chain TB [auth YR] Focus chain TE [auth ZR] Focus chain UC [auth ZA] Focus chain VA [auth YJ] Focus chain VD [auth ZJ] Focus chain WB [auth YS] Focus chain WE [auth ZS] Focus chain XC [auth ZB] Focus chain YA [auth YK] Focus chain YD [auth ZK] Focus chain ZB [auth YT] Focus chain ZE [auth ZT]
A1JWG (Subject of Investigation/LOI) Query on A1JWG Download:Ideal Coordinates CCD File SDF format, chain ZC [auth ZB] SDF format, chain YE [auth ZS] SDF format, chain YB [auth YS] SDF format, chain XD [auth ZJ] SDF format, chain XA [auth YJ] SDF format, chain WC [auth ZA] SDF format, chain VE [auth ZR] SDF format, chain VB [auth YR] SDF format, chain UD [auth ZI] SDF format, chain UA [auth YI] SDF format, chain TF [auth ZZ] SDF format, chain TC [auth YZ] SDF format, chain SE [auth ZQ] SDF format, chain SB [auth YQ] SDF format, chain RD [auth ZH] SDF format, chain QF [auth ZY] SDF format, chain QC [auth YY] SDF format, chain PE [auth ZP] SDF format, chain PB [auth YP] SDF format, chain OD [auth ZG] SDF format, chain NF [auth ZX] SDF format, chain NC [auth YX] SDF format, chain ME [auth ZO] SDF format, chain MB [auth YO] SDF format, chain LD [auth ZF] SDF format, chain KF [auth ZW] SDF format, chain KC [auth YW] SDF format, chain JE [auth ZN] SDF format, chain JB [auth YN] SDF format, chain ID [auth ZE] SDF format, chain HF [auth ZV] SDF format, chain HC [auth YV] SDF format, chain GE [auth ZM] SDF format, chain GB [auth YM] SDF format, chain FD [auth ZD] SDF format, chain EF [auth ZU] SDF format, chain EC [auth YU] SDF format, chain DE [auth ZL] SDF format, chain DB [auth YL] SDF format, chain CD [auth ZC] SDF format, chain BF [auth ZT] SDF format, chain BC [auth YT] SDF format, chain AE [auth ZK] SDF format, chain AB [auth YK] MOL2 format, chain ZC [auth ZB] MOL2 format, chain YE [auth ZS] MOL2 format, chain YB [auth YS] MOL2 format, chain XD [auth ZJ] MOL2 format, chain XA [auth YJ] MOL2 format, chain WC [auth ZA] MOL2 format, chain VE [auth ZR] MOL2 format, chain VB [auth YR] MOL2 format, chain UD [auth ZI] MOL2 format, chain UA [auth YI] MOL2 format, chain TF [auth ZZ] MOL2 format, chain TC [auth YZ] MOL2 format, chain SE [auth ZQ] MOL2 format, chain SB [auth YQ] MOL2 format, chain RD [auth ZH] MOL2 format, chain QF [auth ZY] MOL2 format, chain QC [auth YY] MOL2 format, chain PE [auth ZP] MOL2 format, chain PB [auth YP] MOL2 format, chain OD [auth ZG] MOL2 format, chain NF [auth ZX] MOL2 format, chain NC [auth YX] MOL2 format, chain ME [auth ZO] MOL2 format, chain MB [auth YO] MOL2 format, chain LD [auth ZF] MOL2 format, chain KF [auth ZW] MOL2 format, chain KC [auth YW] MOL2 format, chain JE [auth ZN] MOL2 format, chain JB [auth YN] MOL2 format, chain ID [auth ZE] MOL2 format, chain HF [auth ZV] MOL2 format, chain HC [auth YV] MOL2 format, chain GE [auth ZM] MOL2 format, chain GB [auth YM] MOL2 format, chain FD [auth ZD] MOL2 format, chain EF [auth ZU] MOL2 format, chain EC [auth YU] MOL2 format, chain DE [auth ZL] MOL2 format, chain DB [auth YL] MOL2 format, chain CD [auth ZC] MOL2 format, chain BF [auth ZT] MOL2 format, chain BC [auth YT] MOL2 format, chain AE [auth ZK] MOL2 format, chain AB [auth YK] mmCIF format, chain ZC [auth ZB] mmCIF format, chain YE [auth ZS] mmCIF format, chain YB [auth YS] mmCIF format, chain XD [auth ZJ] mmCIF format, chain XA [auth YJ] mmCIF format, chain WC [auth ZA] mmCIF format, chain VE [auth ZR] mmCIF format, chain VB [auth YR] mmCIF format, chain UD [auth ZI] mmCIF format, chain UA [auth YI] mmCIF format, chain TF [auth ZZ] mmCIF format, chain TC [auth YZ] mmCIF format, chain SE [auth ZQ] mmCIF format, chain SB [auth YQ] mmCIF format, chain RD [auth ZH] mmCIF format, chain QF [auth ZY] mmCIF format, chain QC [auth YY] mmCIF format, chain PE [auth ZP] mmCIF format, chain PB [auth YP] mmCIF format, chain OD [auth ZG] mmCIF format, chain NF [auth ZX] mmCIF format, chain NC [auth YX] mmCIF format, chain ME [auth ZO] mmCIF format, chain MB [auth YO] mmCIF format, chain LD [auth ZF] mmCIF format, chain KF [auth ZW] mmCIF format, chain KC [auth YW] mmCIF format, chain JE [auth ZN] mmCIF format, chain JB [auth YN] mmCIF format, chain ID [auth ZE] mmCIF format, chain HF [auth ZV] mmCIF format, chain HC [auth YV] mmCIF format, chain GE [auth ZM] mmCIF format, chain GB [auth YM] mmCIF format, chain FD [auth ZD] mmCIF format, chain EF [auth ZU] mmCIF format, chain EC [auth YU] mmCIF format, chain DE [auth ZL] mmCIF format, chain DB [auth YL] mmCIF format, chain CD [auth ZC] mmCIF format, chain BF [auth ZT] mmCIF format, chain BC [auth YT] mmCIF format, chain AE [auth ZK] mmCIF format, chain AB [auth YK]	AB [auth YK] AE [auth ZK] BC [auth YT] BF [auth ZT] CD [auth ZC] AB [auth YK], AE [auth ZK], BC [auth YT], BF [auth ZT], CD [auth ZC], DB [auth YL], DE [auth ZL], EC [auth YU], EF [auth ZU], FD [auth ZD], GB [auth YM], GE [auth ZM], HC [auth YV], HF [auth ZV], ID [auth ZE], JB [auth YN], JE [auth ZN], KC [auth YW], KF [auth ZW], LD [auth ZF], MB [auth YO], ME [auth ZO], NC [auth YX], NF [auth ZX], OD [auth ZG], PB [auth YP], PE [auth ZP], QC [auth YY], QF [auth ZY], RD [auth ZH], SB [auth YQ], SE [auth ZQ], TC [auth YZ], TF [auth ZZ], UA [auth YI], UD [auth ZI], VB [auth YR], VE [auth ZR], WC [auth ZA], XA [auth YJ], XD [auth ZJ], YB [auth YS], YE [auth ZS], ZC [auth ZB]	Chlorophyllide a C₃₅ H₃₄ Mg N₄ O₅ LRLVQWDKYFMPKX-NYABAGMLSA-L		Interactions Focus chain AB [auth YK] Focus chain AE [auth ZK] Focus chain BC [auth YT] Focus chain BF [auth ZT] Focus chain CD [auth ZC] Focus chain DB [auth YL] Focus chain DE [auth ZL] Focus chain EC [auth YU] Focus chain EF [auth ZU] Focus chain FD [auth ZD] Focus chain GB [auth YM] Focus chain GE [auth ZM] Focus chain HC [auth YV] Focus chain HF [auth ZV] Focus chain ID [auth ZE] Focus chain JB [auth YN] Focus chain JE [auth ZN] Focus chain KC [auth YW] Focus chain KF [auth ZW] Focus chain LD [auth ZF] Focus chain MB [auth YO] Focus chain ME [auth ZO] Focus chain NC [auth YX] Focus chain NF [auth ZX] Focus chain OD [auth ZG] Focus chain PB [auth YP] Focus chain PE [auth ZP] Focus chain QC [auth YY] Focus chain QF [auth ZY] Focus chain RD [auth ZH] Focus chain SB [auth YQ] Focus chain SE [auth ZQ] Focus chain TC [auth YZ] Focus chain TF [auth ZZ] Focus chain UA [auth YI] Focus chain UD [auth ZI] Focus chain VB [auth YR] Focus chain VE [auth ZR] Focus chain WC [auth ZA] Focus chain XA [auth YJ] Focus chain XD [auth ZJ] Focus chain YB [auth YS] Focus chain YE [auth ZS] Focus chain ZC [auth ZB] Interactions & Density Focus chain AB [auth YK] Focus chain AE [auth ZK] Focus chain BC [auth YT] Focus chain BF [auth ZT] Focus chain CD [auth ZC] Focus chain DB [auth YL] Focus chain DE [auth ZL] Focus chain EC [auth YU] Focus chain EF [auth ZU] Focus chain FD [auth ZD] Focus chain GB [auth YM] Focus chain GE [auth ZM] Focus chain HC [auth YV] Focus chain HF [auth ZV] Focus chain ID [auth ZE] Focus chain JB [auth YN] Focus chain JE [auth ZN] Focus chain KC [auth YW] Focus chain KF [auth ZW] Focus chain LD [auth ZF] Focus chain MB [auth YO] Focus chain ME [auth ZO] Focus chain NC [auth YX] Focus chain NF [auth ZX] Focus chain OD [auth ZG] Focus chain PB [auth YP] Focus chain PE [auth ZP] Focus chain QC [auth YY] Focus chain QF [auth ZY] Focus chain RD [auth ZH] Focus chain SB [auth YQ] Focus chain SE [auth ZQ] Focus chain TC [auth YZ] Focus chain TF [auth ZZ] Focus chain UA [auth YI] Focus chain UD [auth ZI] Focus chain VB [auth YR] Focus chain VE [auth ZR] Focus chain WC [auth ZA] Focus chain XA [auth YJ] Focus chain XD [auth ZJ] Focus chain YB [auth YS] Focus chain YE [auth ZS] Focus chain ZC [auth ZB]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: HELICAL ARRAY
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	2.0_5885
RECONSTRUCTION	PHENIX

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-08-26

Deposition Author(s):

Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	2019/35/D/NZ1/00295

Revision History (Full details and data files)

Version 1.0: 2026-08-26
Type: Initial release

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.