9TIM | pdb_00009tim

Phage 812 baseplate in the pre-contraction state - upper arm

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9TIM

This is version 1.0 of the entry. See complete history. 

Literature

Conformational changes of baseplate regulating tail contraction of Staphylococcus phage 812

Binovsky, J., Plevka, P.

To be published.

Macromolecule Content 

  • Total Structure Weight: 1,492.47 kDa 
  • Atom Count: 97,106 
  • Modeled Residue Count: 12,310 
  • Deposited Residue Count: 13,301 
  • Unique protein chains: 5

Macromolecules

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|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ORF631,019Staphylococcus phage 812K1/420Mutation(s): 0 
UniProt
Find proteins for Q6Y7Q4 (Staphylococcus phage K)
Explore Q6Y7Q4 
Go to UniProtKB:  Q6Y7Q4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6Y7Q4
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Reference Sequence
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|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
ORF64
B, C, D, E, F
B, C, D, E, F, G, H, I, J, K, L, M
173Staphylococcus phage 812K1/420Mutation(s): 0 
UniProt
Find proteins for Q6Y7Q3 (Staphylococcus phage K)
Explore Q6Y7Q3 
Go to UniProtKB:  Q6Y7Q3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6Y7Q3
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Reference Sequence
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|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
ORF65
N, O, P, Q, R
N, O, P, Q, R, S
1,152Staphylococcus phage 812K1/420Mutation(s): 0 
UniProt
Find proteins for Q6Y7Q2 (Staphylococcus phage K)
Explore Q6Y7Q2 
Go to UniProtKB:  Q6Y7Q2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6Y7Q2
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Reference Sequence
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|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
ORF68
T, U, V
458Staphylococcus phage 812K1/420Mutation(s): 0 
UniProt
Find proteins for Q6Y7P9 (Staphylococcus phage K)
Explore Q6Y7P9 
Go to UniProtKB:  Q6Y7P9
Entity Groups
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UniProt GroupQ6Y7P9
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
CBM-cenC domain-containing protein
W, X, Y
640Staphylococcus phage 812K1/420Mutation(s): 0 
UniProt
Find proteins for A0A0U1UXW5 (Staphylococcus phage 812)
Explore A0A0U1UXW5 
Go to UniProtKB:  A0A0U1UXW5
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U1UXW5
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION5
MODEL REFINEMENTPHENIX1.21

Structure Validation

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Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union101043452
Other governmentCzech RepublicLX22NP05103

Revision History  (Full details and data files)

  • Version 1.0: 2026-05-20
    Type: Initial release