9T0I | pdb_00009t0i

Spraguea lophii ribosome dimer, conformation 1.

PDB DOI: https://doi.org/10.2210/pdb9T0I/pdb
EM Map EMD-55401: EMDB EMDataResource

Classification: RIBOSOME
Organism(s): Spraguea lophii 42_110
Mutation(s): No

Deposited: 2025-10-17 Released: 2026-10-28
Deposition Author(s): McLaren, M., Isupov, M.N., Daum, B., Conners, R.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 9.80 Å
Aggregation State: CELL
Reconstruction Method: SUBTOMOGRAM AVERAGING

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

New clues about ribosome hibernation in microsporidia revealed by cryo-electron tomography

McLaren, M., Isupov, M.N., Daum, B., Conners, R.

To be published.

Macromolecule Content

Total Structure Weight: 5,629.18 kDa
Atom Count: 371,532
Modeled Residue Count: 32,682
Deposited Residue Count: 34,142
Unique protein chains: 76
Unique nucleic acid chains: 3

Macromolecules

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L12	C [auth E], DC [auth D]	164	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W9J9 (Spraguea lophii (strain 42_110)) Explore S7W9J9 Go to UniProtKB: S7W9J9
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UniProt Group	S7W9J9
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L34	D [auth KGG], EC [auth LGG]	106	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W7C6 (Spraguea lophii (strain 42_110)) Explore S7W7C6 Go to UniProtKB: S7W7C6
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UniProt Group	S7W7C6
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S1	E [auth RB0], FC [auth SB0]	230	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S2	F [auth RC0], GC [auth SC0]	248	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W7R5 (Spraguea lophii (strain 42_110)) Explore S7W7R5 Go to UniProtKB: S7W7R5
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UniProt Group	S7W7R5
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor 2	H [auth B], IC [auth A]	847	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XLX5 (Spraguea lophii (strain 42_110)) Explore S7XLX5 Go to UniProtKB: S7XLX5
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UniProt Group	S7XLX5
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L10a	I [auth K], JC [auth L]	210	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W9N5 (Spraguea lophii (strain 42_110)) Explore S7W9N5 Go to UniProtKB: S7W9N5
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UniProt Group	S7W9N5
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL10	J [auth N], KC [auth M]	269	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WBY5 (Spraguea lophii (strain 42_110)) Explore S7WBY5 Go to UniProtKB: S7WBY5
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UniProt Group	S7WBY5
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin	K [auth KMM], LC [auth LMM]	127	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XSQ3 (Spraguea lophii (strain 42_110)) Explore S7XSQ3 Go to UniProtKB: S7XSQ3
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UniProt Group	S7XSQ3
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S27	L [auth RBB], MC [auth SBB]	82	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S26	M [auth RAA], NC [auth SAA]	102	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W9M7 (Spraguea lophii (strain 42_110)) Explore S7W9M7 Go to UniProtKB: S7W9M7
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UniProt Group	S7W9M7
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L44	N [auth KOO], OC [auth LOO]	104	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XL20 (Spraguea lophii (strain 42_110)) Explore S7XL20 Go to UniProtKB: S7XL20
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UniProt Group	S7XL20
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37a.	O [auth KPP], PC [auth LPP]	89	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37	P [auth KJJ], QC [auth LJJ]	92	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	Q [auth LA0], RC [auth LA02]	246	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L15	R [auth KAA], SC [auth LAA]	147	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L3	S [auth KB0], TC [auth LB0]	392	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XFB1 (Spraguea lophii (strain 42_110)) Explore S7XFB1 Go to UniProtKB: S7XFB1
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UniProt Group	S7XFB1
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4	T [auth KC0], UC [auth LC0]	328	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WCM8 (Spraguea lophii (strain 42_110)) Explore S7WCM8 Go to UniProtKB: S7WCM8
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UniProt Group	S7WCM8
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L3	U [auth KCC], VC [auth LCC]	110	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAY0 (Spraguea lophii (strain 42_110)) Explore S7WAY0 Go to UniProtKB: S7WAY0
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UniProt Group	S7WAY0
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31	V [auth KDD], WC [auth LDD]	110	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XW48 (Spraguea lophii (strain 42_110)) Explore S7XW48 Go to UniProtKB: S7XW48
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UniProt Group	S7XW48
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L6	W [auth KE0], XC [auth LE0]	171	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W5S3 (Spraguea lophii (strain 42_110)) Explore S7W5S3 Go to UniProtKB: S7W5S3
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UniProt Group	S7W5S3
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32	X [auth KEE], YC [auth LEE]	139	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XKE0 (Spraguea lophii (strain 42_110)) Explore S7XKE0 Go to UniProtKB: S7XKE0
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UniProt Group	S7XKE0
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7	Y [auth KF0], ZC [auth LF0]	235	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W946 (Spraguea lophii (strain 42_110)) Explore S7W946 Go to UniProtKB: S7W946
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UniProt Group	S7W946
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35a	AD [auth LFF], Z [auth KFF]	111	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W662 (Spraguea lophii (strain 42_110)) Explore S7W662 Go to UniProtKB: S7W662
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UniProt Group	S7W662
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	AA [auth KG0], BD [auth LG0]	206	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XU63 (Spraguea lophii (strain 42_110)) Explore S7XU63 Go to UniProtKB: S7XU63
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UniProt Group	S7XU63
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9	BA [auth KH0], CD [auth LH0]	187	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XRZ9 (Spraguea lophii (strain 42_110)) Explore S7XRZ9 Go to UniProtKB: S7XRZ9
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UniProt Group	S7XRZ9
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
60S Ribosomal L29 protein	CA [auth KHH], DD [auth LHH]	119	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
S60 ribosomal protein L10	DA [auth KI0], ED [auth LI0]	218	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WBF8 (Spraguea lophii (strain 42_110)) Explore S7WBF8 Go to UniProtKB: S7WBF8
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UniProt Group	S7WBF8
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36	EA [auth KII], FD [auth LII]	98	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WED1 (Spraguea lophii (strain 42_110)) Explore S7WED1 Go to UniProtKB: S7WED1
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UniProt Group	S7WED1
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11	FA [auth KJ0], GD [auth LJ0]	171	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WB69 (Spraguea lophii (strain 42_110)) Explore S7WB69 Go to UniProtKB: S7WB69
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UniProt Group	S7WB69
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13	GA [auth KL0], HD [auth LL0]	165	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XVM9 (Spraguea lophii (strain 42_110)) Explore S7XVM9 Go to UniProtKB: S7XVM9
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UniProt Group	S7XVM9
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39	HA [auth KLL], ID [auth LLL]	52	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XTP1 (Spraguea lophii (strain 42_110)) Explore S7XTP1 Go to UniProtKB: S7XTP1
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UniProt Group	S7XTP1
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
eL14 LM0	IA [auth KM0], JD [auth LM0]	122	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XVN9 (Spraguea lophii (strain 42_110)) Explore S7XVN9 Go to UniProtKB: S7XVN9
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UniProt Group	S7XVN9
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Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L15	JA [auth KN0], KD [auth LN0]	204	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W7A2 (Spraguea lophii (strain 42_110)) Explore S7W7A2 Go to UniProtKB: S7W7A2
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UniProt Group	S7W7A2
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Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L13A	KA [auth KO0], LD [auth LO0]	198	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XUD8 (Spraguea lophii (strain 42_110)) Explore S7XUD8 Go to UniProtKB: S7XUD8
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UniProt Group	S7XUD8
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Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17	LA [auth KP0], MD [auth LP0]	167	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WDR4 (Spraguea lophii (strain 42_110)) Explore S7WDR4 Go to UniProtKB: S7WDR4
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UniProt Group	S7WDR4
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18	MA [auth KQ0], ND [auth LQ0]	183	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAI2 (Spraguea lophii (strain 42_110)) Explore S7WAI2 Go to UniProtKB: S7WAI2
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UniProt Group	S7WAI2
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L19	NA [auth KR0], OD [auth LR0]	168	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WBY9 (Spraguea lophii (strain 42_110)) Explore S7WBY9 Go to UniProtKB: S7WBY9
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UniProt Group	S7WBY9
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L20	OA [auth KS0], PD [auth LS0]	171	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAG4 (Spraguea lophii (strain 42_110)) Explore S7WAG4 Go to UniProtKB: S7WAG4
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UniProt Group	S7WAG4
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
60s ribosomal protein L21	PA [auth KT0], QD [auth LT0]	158	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W8F6 (Spraguea lophii (strain 42_110)) Explore S7W8F6 Go to UniProtKB: S7W8F6
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UniProt Group	S7W8F6
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L22	QA [auth KU0], RD [auth LU0]	113	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W958 (Spraguea lophii (strain 42_110)) Explore S7W958 Go to UniProtKB: S7W958
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UniProt Group	S7W958
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L23	RA [auth KV0], SD [auth LV0]	142	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XLC4 (Spraguea lophii (strain 42_110)) Explore S7XLC4 Go to UniProtKB: S7XLC4
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UniProt Group	S7XLC4
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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L24E	SA [auth KW0], TD [auth LW0]	131	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XSY2 (Spraguea lophii (strain 42_110)) Explore S7XSY2 Go to UniProtKB: S7XSY2
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UniProt Group	S7XSY2
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Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23a	TA [auth KX0], UD [auth LX0]	113	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XFW8 (Spraguea lophii (strain 42_110)) Explore S7XFW8 Go to UniProtKB: S7XFW8
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UniProt Group	S7XFW8
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Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26	UA [auth KY0], VD [auth LY0]	131	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W884 (Spraguea lophii (strain 42_110)) Explore S7W884 Go to UniProtKB: S7W884
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UniProt Group	S7W884
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	VA [auth KZ0], WD [auth LZ0]	153	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XU08 (Spraguea lophii (strain 42_110)) Explore S7XU08 Go to UniProtKB: S7XU08
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UniProt Group	S7XU08
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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
DNL-type domain-containing protein	WA [auth ND1], XD [auth MD1]	151	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W5K5 (Spraguea lophii (strain 42_110)) Explore S7W5K5 Go to UniProtKB: S7W5K5
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UniProt Group	S7W5K5
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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S0	XA [auth RA0], YD [auth SA0]	233	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W8R1 (Spraguea lophii (strain 42_110)) Explore S7W8R1 Go to UniProtKB: S7W8R1
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UniProt Group	S7W8R1
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S28	YA [auth RCC], ZD [auth SCC]	65	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S4	AE [auth SE0], ZA [auth RE0]	280	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XG51 (Spraguea lophii (strain 42_110)) Explore S7XG51 Go to UniProtKB: S7XG51
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UniProt Group	S7XG51
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Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S30	AB [auth REE], BE [auth SEE]	60	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide binding protein beta subunit	BB [auth RGG], CE [auth SGG]	326	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XVG3 (Spraguea lophii (strain 42_110)) Explore S7XVG3 Go to UniProtKB: S7XVG3
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UniProt Group	S7XVG3
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Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8	CB [auth RI0], DE [auth SI0]	173	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XGW2 (Spraguea lophii (strain 42_110)) Explore S7XGW2 Go to UniProtKB: S7XGW2
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UniProt Group	S7XGW2
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Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S9	DB [auth RJ0], EE [auth SJ0]	184	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W8E3 (Spraguea lophii (strain 42_110)) Explore S7W8E3 Go to UniProtKB: S7W8E3
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UniProt Group	S7W8E3
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Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S10	EB [auth RK0], FE [auth SK0]	107	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XU48 (Spraguea lophii (strain 42_110)) Explore S7XU48 Go to UniProtKB: S7XU48
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UniProt Group	S7XU48
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Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S11	FB [auth RL0], GE [auth SL0]	155	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W8R0 (Spraguea lophii (strain 42_110)) Explore S7W8R0 Go to UniProtKB: S7W8R0
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UniProt Group	S7W8R0
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Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S12	GB [auth RM0], HE [auth SM0]	130	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W7D2 (Spraguea lophii (strain 42_110)) Explore S7W7D2 Go to UniProtKB: S7W7D2
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UniProt Group	S7W7D2
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Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S13	HB [auth RN0], IE [auth SN0]	143	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XVZ9 (Spraguea lophii (strain 42_110)) Explore S7XVZ9 Go to UniProtKB: S7XVZ9
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UniProt Group	S7XVZ9
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Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S14	IB [auth RO0], JE [auth SO0]	135	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W6I0 (Spraguea lophii (strain 42_110)) Explore S7W6I0 Go to UniProtKB: S7W6I0
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UniProt Group	S7W6I0
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Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S19	JB [auth RP0], KE [auth SP0]	163	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XKY9 (Spraguea lophii (strain 42_110)) Explore S7XKY9 Go to UniProtKB: S7XKY9
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UniProt Group	S7XKY9
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Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S16	KB [auth RQ0], LE [auth SQ0]	143	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WDU9 (Spraguea lophii (strain 42_110)) Explore S7WDU9 Go to UniProtKB: S7WDU9
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UniProt Group	S7WDU9
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Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S17	LB [auth RR0], ME [auth SR0]	120	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S18	MB [auth RS0], NE [auth SS0]	160	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XJA1 (Spraguea lophii (strain 42_110)) Explore S7XJA1 Go to UniProtKB: S7XJA1
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UniProt Group	S7XJA1
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Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
40S Ribosomal protein S19	NB [auth RT0], OE [auth ST0]	143	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W7P5 (Spraguea lophii (strain 42_110)) Explore S7W7P5 Go to UniProtKB: S7W7P5
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UniProt Group	S7W7P5
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Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S20	OB [auth RU0], PE [auth SU0]	119	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W986 (Spraguea lophii (strain 42_110)) Explore S7W986 Go to UniProtKB: S7W986
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UniProt Group	S7W986
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Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S21E	PB [auth RV0], QE [auth SV0]	67	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAC1 (Spraguea lophii (strain 42_110)) Explore S7WAC1 Go to UniProtKB: S7WAC1
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UniProt Group	S7WAC1
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Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein uS12	QB [auth RX0], RE [auth SX0]	141	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
40s ribosomal protein s24	RB [auth RY0], SE [auth SY0]	146	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W8J5 (Spraguea lophii (strain 42_110)) Explore S7W8J5 Go to UniProtKB: S7W8J5
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UniProt Group	S7W8J5
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Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S25	SB [auth RZ0], TE [auth SZ0]	128	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAV8 (Spraguea lophii (strain 42_110)) Explore S7WAV8 Go to UniProtKB: S7WAV8
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UniProt Group	S7WAV8
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Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L5	TB [auth KD0], UE [auth LD0]	291	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XIG7 (Spraguea lophii (strain 42_110)) Explore S7XIG7 Go to UniProtKB: S7XIG7
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UniProt Group	S7XIG7
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Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S29	UB [auth RDD], VE [auth SDD]	65	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XJB1 (Spraguea lophii (strain 42_110)) Explore S7XJB1 Go to UniProtKB: S7XJB1
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UniProt Group	S7XJB1
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Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3	VB [auth RD0], WE [auth SD0]	242	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAW0 (Spraguea lophii (strain 42_110)) Explore S7WAW0 Go to UniProtKB: S7WAW0
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UniProt Group	S7WAW0
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Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6	WB [auth RG0], XE [auth SG0]	230	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S7	XB [auth RH0], YE [auth SH0]	164	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XV29 (Spraguea lophii (strain 42_110)) Explore S7XV29 Go to UniProtKB: S7XV29
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UniProt Group	S7XV29
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Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S15A	YB [auth RW0], ZE [auth SW0]	128	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XK92 (Spraguea lophii (strain 42_110)) Explore S7XK92 Go to UniProtKB: S7XK92
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UniProt Group	S7XK92
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Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S5	AF [auth SF0], ZB [auth RF0]	195	Spraguea lophii 42_110	Mutation(s): 0
UniProt
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UniProt Group	S7W4M9
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Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin/40s ribosomal protein S27a fusion	AC [auth RFF], BF [auth SFF]	150	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W9X5 (Spraguea lophii (strain 42_110)) Explore S7W9X5 Go to UniProtKB: S7W9X5
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UniProt Group	S7W9X5
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 1
RNA 23S	A [auth K50], BC [auth L50]	2,618	Spraguea lophii 42_110
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Molecule	Chains	Length	Organism
Entity ID: 2
RNA 16S	B [auth R60], CC [auth S60]	1,368	Spraguea lophii 42_110
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Molecule	Chains	Length	Organism
Entity ID: 7
RNA 5S	G [auth K70], HC [auth L70]	119	Spraguea lophii 42_110
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Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN (Subject of Investigation/LOI) Query on ZN Download:Ideal Coordinates CCD File SDF format, chain DF [auth KMM] SDF format, chain EF [auth RBB] SDF format, chain FF [auth RAA] SDF format, chain GF [auth KOO] SDF format, chain HF [auth KPP] SDF format, chain IF [auth KJJ] SDF format, chain JF [auth ND1] SDF format, chain KF [auth RFF] SDF format, chain LF [auth LGG] SDF format, chain NF [auth SBB] SDF format, chain OF [auth SAA] SDF format, chain PF [auth LOO] SDF format, chain QF [auth LPP] SDF format, chain RF [auth LJJ] SDF format, chain SF [auth MD1] SDF format, chain TF [auth SFF] SDF format, chain MF [auth LMM] SDF format, chain CF [auth KGG] MOL2 format, chain DF [auth KMM] MOL2 format, chain EF [auth RBB] MOL2 format, chain FF [auth RAA] MOL2 format, chain GF [auth KOO] MOL2 format, chain HF [auth KPP] MOL2 format, chain IF [auth KJJ] MOL2 format, chain JF [auth ND1] MOL2 format, chain KF [auth RFF] MOL2 format, chain LF [auth LGG] MOL2 format, chain NF [auth SBB] MOL2 format, chain OF [auth SAA] MOL2 format, chain PF [auth LOO] MOL2 format, chain QF [auth LPP] MOL2 format, chain RF [auth LJJ] MOL2 format, chain SF [auth MD1] MOL2 format, chain TF [auth SFF] MOL2 format, chain MF [auth LMM] MOL2 format, chain CF [auth KGG] mmCIF format, chain DF [auth KMM] mmCIF format, chain EF [auth RBB] mmCIF format, chain FF [auth RAA] mmCIF format, chain GF [auth KOO] mmCIF format, chain HF [auth KPP] mmCIF format, chain IF [auth KJJ] mmCIF format, chain JF [auth ND1] mmCIF format, chain KF [auth RFF] mmCIF format, chain LF [auth LGG] mmCIF format, chain NF [auth SBB] mmCIF format, chain OF [auth SAA] mmCIF format, chain PF [auth LOO] mmCIF format, chain QF [auth LPP] mmCIF format, chain RF [auth LJJ] mmCIF format, chain SF [auth MD1] mmCIF format, chain TF [auth SFF] mmCIF format, chain MF [auth LMM] mmCIF format, chain CF [auth KGG]	CF [auth KGG] DF [auth KMM] EF [auth RBB] FF [auth RAA] GF [auth KOO] CF [auth KGG], DF [auth KMM], EF [auth RBB], FF [auth RAA], GF [auth KOO], HF [auth KPP], IF [auth KJJ], JF [auth ND1], KF [auth RFF], LF [auth LGG], MF [auth LMM], NF [auth SBB], OF [auth SAA], PF [auth LOO], QF [auth LPP], RF [auth LJJ], SF [auth MD1], TF [auth SFF]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain CF [auth KGG] Focus chain DF [auth KMM] Focus chain EF [auth RBB] Focus chain FF [auth RAA] Focus chain GF [auth KOO] Focus chain HF [auth KPP] Focus chain IF [auth KJJ] Focus chain JF [auth ND1] Focus chain KF [auth RFF] Focus chain LF [auth LGG] Focus chain MF [auth LMM] Focus chain NF [auth SBB] Focus chain OF [auth SAA] Focus chain PF [auth LOO] Focus chain QF [auth LPP] Focus chain RF [auth LJJ] Focus chain SF [auth MD1] Focus chain TF [auth SFF] Interactions & Density Focus chain CF [auth KGG] Focus chain DF [auth KMM] Focus chain EF [auth RBB] Focus chain FF [auth RAA] Focus chain GF [auth KOO] Focus chain HF [auth KPP] Focus chain IF [auth KJJ] Focus chain JF [auth ND1] Focus chain KF [auth RFF] Focus chain LF [auth LGG] Focus chain MF [auth LMM] Focus chain NF [auth SBB] Focus chain OF [auth SAA] Focus chain PF [auth LOO] Focus chain QF [auth LPP] Focus chain RF [auth LJJ] Focus chain SF [auth MD1] Focus chain TF [auth SFF]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 9.80 Å
Aggregation State: CELL
Reconstruction Method: SUBTOMOGRAM AVERAGING

EM Software:

Task	Software Package	Version
RECONSTRUCTION	M

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-10-28

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	212439/Z/18/Z

Revision History (Full details and data files)

Version 1.0: 2026-10-28
Type: Initial release

9T0I | pdb_00009t0i

Spraguea lophii ribosome dimer, conformation 1.

Literature

New clues about ribosome hibernation in microsporidia revealed by cryo-electron tomography

Biological Assembly 1

Macromolecules

Entity ID: 3

UniProt

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Entity ID: 4

UniProt

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Entity ID: 5

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Entity ID: 6

UniProt

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Entity ID: 8

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Entity ID: 9

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Entity ID: 10

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Entity ID: 11

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Entity ID: 12

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Entity ID: 13

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Entity ID: 14

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Entity ID: 15

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Entity ID: 16

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Entity ID: 17

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Entity ID: 18

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Entity ID: 19

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Entity ID: 20

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Entity ID: 21

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Entity ID: 22

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Entity ID: 23

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