9SGN | pdb_00009sgn

S315I KatG mutant no Heme


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

Uncovering the structural impact of KatG Ser315 mutations in Mycobacterium tuberculosis via cryo-EM.

Allport, T.Chaplin, A.K.

(2026) Protein Sci 35: e70409-e70409

  • DOI: https://doi.org/10.1002/pro.70409
  • Primary Citation Related Structures: 
    9SGL, 9SGM, 9SGN, 9SGO, 9SGP, 9SGQ, 9SGR, 9SGS, 9SGT, 9SGY

  • PubMed Abstract: 

    Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis (TB), is responsible for a global health burden affecting over a quarter of the world's population. The increasing prevalence of drug-resistant TB poses a significant threat to current treatment strategies. Isoniazid (INH) is a first-line prodrug used in TB therapy, which requires activation by the catalase-peroxidase enzyme KatG. Upon activation, INH inhibits InhA, thereby disrupting mycolic acid biosynthesis, a crucial process for maintaining Mtb's distinctive, lipid-rich cell wall. The most common naturally occurring resistance-associated mutation in KatG is S315T, though other variants at this position, such as S315G, S315N, S315I, and S315R, have also been reported. In this study, we employ cryo-electron microscopy (cryo-EM) to investigate the structural basis of INH resistance conferred by these KatG variants. We present high-resolution cryo-EM structures that reveal heterogeneity in heme loading among the mutants. Detailed structural analysis highlights alterations in the hydrogen-bonding network and substrate access channel unique to each variant, offering direct comparisons with the wild-type (WT) KatG protein. Our findings provide a molecular explanation for clinical INH resistance and lay the groundwork for the rational design of next-generation anti-TB therapeutics.


  • Organizational Affiliation
    • Department of Molecular and Cell Biology, University of Leicester, Leicester Institute for Structural and Chemical Biology, Leicester, UK.

Macromolecule Content 

  • Total Structure Weight: 168.03 kDa 
  • Atom Count: 8,513 
  • Modeled Residue Count: 1,098 
  • Deposited Residue Count: 1,542 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Catalase-peroxidaseA [auth AP1],
B [auth BP1]
771Mycobacterium tuberculosisMutation(s): 0 
Gene Names: katG
EC: 1.11.1.21
UniProt
Find proteins for Q9APA6 (Mycobacterium tuberculosis)
Explore Q9APA6 
Go to UniProtKB:  Q9APA6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9APA6
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2026-01-14
    Type: Initial release