9S7G | pdb_00009s7g

SPACA9 and MNMIP1 bound to the seam of manchette microtubules


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9S7G

This is version 1.0 of the entry. See complete history

Literature

SPACA9 and MNMIP1 bridge the seam of manchette microtubules

Judernatz, J.H.Zhang, R.Zeev-Ben-Mordehai, T.

To be published.

Macromolecule Content 

  • Total Structure Weight: 220.66 kDa 
  • Atom Count: 15,323 
  • Modeled Residue Count: 1,929 
  • Deposited Residue Count: 1,949 
  • Unique protein chains: 4

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Tubulin beta-4B chainA [auth B],
C [auth D]
426Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for Q6P9T8 (Rattus norvegicus)
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Go to UniProtKB:  Q6P9T8
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UniProt GroupQ6P9T8
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Tubulin alpha-1A chainB [auth A],
D [auth C]
437Rattus norvegicusMutation(s): 0 
EC: 3.6.5
UniProt
Find proteins for P68370 (Rattus norvegicus)
Explore P68370 
Go to UniProtKB:  P68370
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UniProt GroupP68370
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Sperm acrosome-associated protein 9159Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for Q4V8P4 (Rattus norvegicus)
Explore Q4V8P4 
Go to UniProtKB:  Q4V8P4
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UniProt GroupQ4V8P4
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
SH3 domain containing 2164Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for F6PUS4 (Rattus norvegicus)
Explore F6PUS4 
Go to UniProtKB:  F6PUS4
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UniProt GroupF6PUS4
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419
RECONSTRUCTIONcryoSPARC4.6

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union101088673

Revision History  (Full details and data files)

  • Version 1.0: 2026-06-17
    Type: Initial release