9RCB | pdb_00009rcb

Unsheathed flagellar filament in Vibrio alginolyticus


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9RCB

This is version 1.1 of the entry. See complete history

Literature

The structure of the Vibrio alginolyticus flagellar filament suggests molecular mechanism for the rotation of sheathed flagella.

Qin, K.Einenkel, R.Zhao, W.Kuhne, C.Atherton, J.Erhardt, M.Bergeron, J.R.C.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-71203-7
  • Primary Citation Related Structures: 
    9RCB, 9RCD

  • PubMed Abstract: 

    In several pathogenic bacteria, including Vibrio species, the filament of the bacterial flagellum is encased by a membranous sheath, an extension of the bacterial outer membrane. It has been proposed that having sheathed flagella permit bacteria to evade an immune response against flagellar components, suggesting a role in virulence. However, the molecular details of the interaction between sheath and filament, and how it impacts filament rotation, remain largely uncharacterized. Here, we combine single-particle cryo-electron microscopy, cryo-electron tomography, and genetic analyses to resolve the molecular architecture and biogenesis of the sheathed flagellum in Vibrio alginolyticus. We show that the flagellar filament forms a canonical 11-stranded supercoil made of the flagellin FlaD2 and enveloped by a bilayered sheath. We report that the filament surface is highly electronegative, suggesting that electrostatic repulsion between filament and sheath may reduce friction and supports high-speed flagellar rotation. We also show that the filament cap protein FliD possesses a unique domain in sheathed flagella, that may coordinate sheath assembly with filament elongation. Collectively, this structural insight into the structure of the Vibrio alginolyticus flagellum suggests a molecular mechanism for the rotation of sheathed flagella.


  • Organizational Affiliation
    • Randall Centre for Cell and Molecular Biophysics, King's College London, London, UK. kailin.qin@kcl.ac.uk.

Macromolecule Content 

  • Total Structure Weight: 1,764.98 kDa 
  • Atom Count: 123,112 
  • Modeled Residue Count: 16,544 
  • Deposited Residue Count: 16,588 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellin377Vibrio alginolyticusMutation(s): 0 
UniProt
Find proteins for B9VXZ1 (Vibrio alginolyticus)
Explore B9VXZ1 
Go to UniProtKB:  B9VXZ1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB9VXZ1
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/R009759/2
Human Frontier Science Program (HFSP)FranceRGY0080/2021

Revision History  (Full details and data files)

  • Version 1.0: 2026-04-15
    Type: Initial release
  • Version 1.1: 2026-05-06
    Changes: Data collection, Database references