9QJQ | pdb_00009qjq

GABA-A receptor a3b3 (1:4) + a3NB77(silent) + b3Mb125 + GABA


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.63 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9QJQ

This is version 1.0 of the entry. See complete history

Literature

Determining the molecular and physiological actions of subtype-selective nanobodies of GABA A receptors.

Gonzalez-Prada, J.E.Liu, S.Shang, C.Chernoff, C.S.Bright, D.P.Mortensen, M.Jones, C.F.Nestorow, S.Kasaragod, V.B.Chen, W.N.Hannan, S.Zhou, J.Dunn, A.W.E.Soltani, A.Turner, R.J.Duggan, N.M.Yuan, Y.Wahid, A.A.Hardwick, S.W.Scott, S.Chirgadze, D.Y.Pardon, E.Steyaert, J.Aricescu, A.R.Paulsen, O.Belin, D.Smart, T.G.Miller, P.S.

(2026) Sci Adv 12: eaeg3548-eaeg3548

  • DOI: https://doi.org/10.1126/sciadv.aeg3548
  • Primary Citation Related Structures: 
    9QJP, 9QJQ, 9QJR, 9QJS, 9QJV, 9QJX, 9QJY, 9QK0, 9QK1, 9TNB, 9TNS, 9TPQ

  • PubMed Abstract: 

    γ-Aminobutyric acid type-A (GABA A ) receptors are the principal mediators of inhibitory neurotransmission in the human central nervous system. The α 2 - and α 3 -containing subtypes have tightly controlled spatial expression profiles, which influence anxiety, nociception, epilepsy, and autism. α 2 3 -Selective small molecules compromise on strength of effect (efficacy) to avoid off-subtype modulation. To break this pharmacological deadlock, we study here a panel of nanobodies (NBs) raised against α 2 - and α 3 -containing GABA A receptors. We identify subtype selective silent binders, positive allosteric modulators (PAMs), and inhibitors. Cryo-electron microscopy structures explain the binding modes and molecular mechanisms of action of representative NBs. Modulators exhibit distinct synaptic and extrasynaptic functional profiles in brain slices and neuronal networks and can reduce anxiety in vivo. These selective and efficacious NBs (whether inhibitors or positive modulators) enable strong yet precise pharmacological control of α 2 3 -containing subtypes to advance basic research and as potential therapeutic leads to treat neuropsychiatric disorders.


  • Organizational Affiliation
    • Department of Pharmacology, University of Cambridge, Cambridge, UK.

Macromolecule Content 

  • Total Structure Weight: 440.88 kDa 
  • Atom Count: 17,818 
  • Modeled Residue Count: 2,148 
  • Deposited Residue Count: 3,887 
  • Unique protein chains: 4

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Gamma-aminobutyric acid receptor subunit alpha-3393Homo sapiensMutation(s): 0 
Gene Names: GABRA3
UniProt & NIH Common Fund Data Resources
Find proteins for P34903 (Homo sapiens)
Explore P34903 
Go to UniProtKB:  P34903
GTEx:  ENSG00000011677 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP34903
Glycosylation
Glycosylation Sites: 3Go to GlyGen: P34903-1
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
GABA-A receptor b3bril
B, C, D, E
451Homo sapiensMutation(s): 0 
Entity Groups
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Glycosylation
Glycosylation Sites: 2
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
A3NB77124Lama glamaMutation(s): 0 
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Mb125
G, H, I
522Lama glamaMutation(s): 0 
Entity Groups
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Reference Sequence

Oligosaccharides

Help  
Entity ID: 5
MoleculeChains Length2D Diagram GlycosylationD Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
J,
K,
L [auth M],
N [auth O],
P [auth Q],
J,
K,
L [auth M],
N [auth O],
P [auth Q],
R [auth S]
2N-Glycosylation
Entity ID: 6
MoleculeChains Length2D Diagram GlycosylationD Interactions
alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseM [auth N],
O [auth P],
Q [auth R],
S [auth T]
6N-Glycosylation

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.63 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/M024709/1

Revision History  (Full details and data files)

  • Version 1.0: 2026-08-26
    Type: Initial release