9QD1 | pdb_00009qd1

Structure of J paramyxovirus virus receptor binding protein

PDB DOI: https://doi.org/10.2210/pdb9QD1/pdb

Classification: VIRAL PROTEIN
Organism(s): J virus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2025-03-05 Released: 2025-11-19
Deposition Author(s): Stelfox, A.J., Bowden, T.A.
Funding Organization(s): Medical Research Council (MRC, United Kingdom), Engineering and Physical Sciences Research Council, Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.207 (Depositor), 0.207 (DCC)
R-Value Work:
0.189 (Depositor), 0.190 (DCC)
R-Value Observed:
0.190 (Depositor)

Starting Model: experimental
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This is version 1.0 of the entry. See complete history.

Literature

Structure of the Jeilongvirus Receptor Binding Receptor Protein Provides a Molecular Basis for Elongation of the Paramyxoviral C-terminus

Stelfox, A.J., Javorsky, A., Stass, R., Sutton, G., El Omari, K., Bowden, T.A.

To be published.

Macromolecule Content

Total Structure Weight: 96.2 kDa
Atom Count: 7,050
Modeled Residue Count: 870
Deposited Residue Count: 870
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Attachment glycoprotein	A, B	435	J virus	Mutation(s): 0
UniProt
Find proteins for Q49HN3 (J virus) Explore Q49HN3 Go to UniProtKB: Q49HN3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q49HN3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.207 (Depositor), 0.207 (DCC)
R-Value Work: 0.189 (Depositor), 0.190 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 164.24	α = 90
b = 164.24	β = 90
c = 112.47	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
xia2	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-11-19

Deposition Author(s):

Funding Organization	Location	Grant Number
Medical Research Council (MRC, United Kingdom)	United Kingdom	MR/L009528/1
Medical Research Council (MRC, United Kingdom)	United Kingdom	MR/S007555/1
Engineering and Physical Sciences Research Council	United Kingdom	EP/K503113/1
Engineering and Physical Sciences Research Council	United Kingdom	EP/L505031/1
Engineering and Physical Sciences Research Council	United Kingdom	EP/M50659X/1
Engineering and Physical Sciences Research Council	United Kingdom	EP/M508111/1
Wellcome Trust	United Kingdom	203141/Z/16Z

Revision History (Full details and data files)

Version 1.0: 2025-11-19
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.