9PY3 | pdb_00009py3

Deposited: 2025-08-06 Released: 2025-11-12
Deposition Author(s): Gati, C., Han, G.W., Khan, S.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Center for Complementary and Integrative Health (NIH/NCCIH)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Khan, S., Han, G.W., Gati, C.

To be published.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	A [auth B]	361	Homo sapiens	Mutation(s): 0 Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens) Explore P62873 Go to UniProtKB: P62873
PHAROS: P62873 GTEx: ENSG00000078369
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62873
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2	B [auth C]	71	Homo sapiens	Mutation(s): 0 Gene Names: GNG2
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens) Explore P59768 Go to UniProtKB: P59768
PHAROS: P59768 GTEx: ENSG00000186469
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P59768
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Soluble cytochrome b562,Mu-type opioid receptor	C [auth R]	622	Homo sapiens	Mutation(s): 0 Gene Names: cybC, OPRM1, MOR1
UniProt & NIH Common Fund Data Resources
Find proteins for P0ABE7 (Escherichia coli) Explore P0ABE7 Go to UniProtKB: P0ABE7
Find proteins for P35372 (Homo sapiens) Explore P35372 Go to UniProtKB: P35372
PHAROS: P35372 GTEx: ENSG00000112038
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	P0ABE7 P35372
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(i) subunit alpha-1	D [auth A]	354	Homo sapiens	Mutation(s): 0 Gene Names: GNAI1 EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P63096 (Homo sapiens) Explore P63096 Go to UniProtKB: P63096
PHAROS: P63096 GTEx: ENSG00000127955
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P63096
Sequence Annotations Expand
Reference Sequence

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1CMV (Subject of Investigation/LOI) Query on A1CMV Download:Ideal Coordinates CCD File SDF format, chain G [auth R] MOL2 format, chain G [auth R] mmCIF format, chain G [auth R]	G [auth R]	4-[4-(4-chlorophenyl)-4-hydroxypiperidin-1-yl]-N,N-dimethyl-2,2-diphenylbutanamide C₂₉ H₃₃ Cl N₂ O₂ RDOIQAHITMMDAJ-UHFFFAOYSA-N		Interactions Focus chain G [auth R] Interactions & Density Focus chain G [auth R]
VSN (Subject of Investigation/LOI) Query on VSN Download:Ideal Coordinates CCD File SDF format, chain H [auth A] MOL2 format, chain H [auth A] mmCIF format, chain H [auth A]	H [auth A]	5'-O-[(R)-hydroxy(thiophosphonooxy)phosphoryl]guanosine C₁₀ H₁₅ N₅ O₁₀ P₂ S QJXJXBXFIOTYHB-UUOKFMHZSA-N		Interactions Focus chain H [auth A] Interactions & Density Focus chain H [auth A]
CLR Query on CLR Download:Ideal Coordinates CCD File SDF format, chain E [auth R] SDF format, chain F [auth R] MOL2 format, chain E [auth R] MOL2 format, chain F [auth R] mmCIF format, chain E [auth R] mmCIF format, chain F [auth R]	E [auth R], F [auth R]	CHOLESTEROL C₂₇ H₄₆ O HVYWMOMLDIMFJA-DPAQBDIFSA-N		Interactions Focus chain E [auth R] Focus chain F [auth R] Interactions & Density Focus chain E [auth R] Focus chain F [auth R]

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	v4.3.1

& Funding Information

Deposition Author(s):

Gati, C.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM144965
National Institutes of Health/National Center for Complementary and Integrative Health (NIH/NCCIH)	United States	AT012075