Download MendeleyExploiting a Cryptic Pocket in DsbA through Structure-Guided Parallel Synthesis and Direct-to-Biology Screening.
Tasdan, Y., Balaji, G.R., Davidson, J., Akhtar, N., Ilyichova, O., Guetzoyan, L.J., Chandrashekaran, I.R., Alwan, W., Cobb, H., Gunzburg, M.J., Hasanzada, A., Roughley, S.D., Murray, J.B., Thai, V.C., Cliff, T., Kahler, C.M., Mohanty, B., Capuano, B., Doak, B.C., Scanlon, M.J.(2026) J Med Chem 69: 6760-6774
- PubMed: 41789772 Search on PubMed
- DOI: https://doi.org/10.1021/acs.jmedchem.5c03004
- Primary Citation Related Structures:
9PRE, 9PRF, 9PRG, 9PRH, 9PRI, 9PRJ, 9PRK, 9PRL, 9PRM - PubMed Abstract:
Antibacterial resistance is a major global health problem, causing an increasing number of deaths worldwide. DsbA, a bacterial oxidoreductase enzyme, is pivotal for the correct folding and activity of virulence factors in bacteria. Inhibiting DsbA presents a promising avenue for developing antivirulence compounds and combating bacterial resistance. The enzyme's structure features two ligand-binding sites: a hydrophobic groove that is the binding site for natural peptide substrates and a "cryptic pocket" enclosed within the protein, which has recently been identified as a target for ligand design. In this study, we report the elaboration of a fragment from within the enclosed cryptic pocket into the hydrophobic groove of Escherichia coli DsbA, using X-ray crystallography-guided structure-based design and parallel synthesis coupled with crude reaction mixture screening (direct-to-biology). This effort yielded the most potent small-molecule Ec DsbA inhibitors reported to date and exemplifies a productive strategy for exploiting a cryptic pocket for drug development.
- Medicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, VIC 3052, Australia.
Organizational Affiliation:
