9PN5 | pdb_00009pn5

Composite map of hypomethylated 80S ribosome treated with hygromycin B

  • Classification: RIBOSOME
  • Organism(s): Saccharomyces cerevisiae BY4741
  • Mutation(s): No 

  • Deposited: 2025-07-19 Released: 2026-05-20 
  • Deposition Author(s): Zhao, Y., Li, H.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.75 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

2'-O-Methylation maintains ribosome structural and translation integrity.

Zhao, Y.Rai, J.Cohen, L.N.Shu, Y.Xu, C.Goswami, H.Chen, X.Jin, H.Marchand, V.Motorin, Y.Ghalei, H.Li, H.

(2026) Mol Cell 86: 1495-1510.e7

  • DOI: https://doi.org/10.1016/j.molcel.2026.03.008
  • Primary Citation Related Structures: 
    9PN5

  • PubMed Abstract: 

    In eukaryotic ribosomes, ∼2% of RNA nucleotides undergo 2'-O-methylation, a conserved cellular mechanism thought to be critical for maintaining and regulating translation. Here, we use ribosome profiling, translation assays, proteomics, and high-resolution structural analyses to show that loss of native 2'-O-methylation in yeast ribosomes disproportionally affects the translation of ribosomal protein transcripts, driven by changes in codon usage and recognition of structured RNA. Translation reprogramming by the hypomethylated ribosomes is supported by reduced thermostability and high-resolution evidence of altered ribosomal structures and conformations. Consistent with the roles of the affected proteins in sustaining cellular fitness, hypomethylated ribosomes under stress exhibit a selective loss of downregulated proteins and misassembly associated with methylation loss. Our data provide structural and mechanistic insights into how 2'-O-methylation supports ribosome integrity and mediates cellular stress responses.


  • Organizational Affiliation
    • Department of Structural Biology, Van Andel Institute Grand Rapids, MI 49503, USA.

Macromolecule Content 

  • Total Structure Weight: 3,043.23 kDa 
  • Atom Count: 200,291 
  • Modeled Residue Count: 16,277 
  • Deposited Residue Count: 17,147 
  • Unique protein chains: 74
  • Unique nucleic acid chains: 4

Macromolecules


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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS2AA [auth BA]252Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for B3LI22 (Saccharomyces cerevisiae (strain RM11-1a))
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS1AB [auth BB]255Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for B3RHV0 (Saccharomyces cerevisiae (strain RM11-1a))
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS5C [auth BC]254Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P25443 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS4AD [auth BE]261Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS6AE [auth BG]236Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS7AF [auth BH]190Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS8AG [auth BI]200Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS4AH [auth BJ]197Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS17AI [auth BL]156Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS15J [auth BN]151Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 11
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS11AK [auth BO]137Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS21AL [auth BV]87Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 13
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS8AM [auth BW]130Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 14
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS12AN [auth BX]145Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 15
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS24AO [auth BY]135Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 16
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS26BP [auth Ba]119Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 17
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS27AQ [auth Bb]82Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 18
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS30AR [auth Be]63Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 19
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS3S [auth BD]240Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P05750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 20
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS7T [auth BF]225Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Find proteins for P26783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 21
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS10AU [auth BK]105Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 22
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS19V [auth BP]142Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 23
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS9AW [auth BQ]143Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 24
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS17AX [auth BR]136Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P02407 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 25
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS13AY [auth BS]146Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 26
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS19AZ [auth BT]144Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Find proteins for P07280 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 27
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS10AA [auth BU]121Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 28
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS25ABA [auth BZ]108Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q3E792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 29
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS28ACA [auth Bc]67Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 30
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS14ADA [auth Bd]56Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 31
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein RACK1EA [auth Bg]319Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 32
MoleculeChains  Sequence LengthOrganismDetailsImage
Ubiquitin-ribosomal protein eS31 fusion proteinFA [auth Bf]152Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 33
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS12GA [auth BM]143Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 35
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L2-AIA [auth AA]254Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 36
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL3JA [auth AB]387Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 37
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L4-AKA [auth AC]362Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 41
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L5OA [auth AD]297Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 42
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL6APA [auth AE]176Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 43
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L7-AQA [auth AF]244Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 44
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL8ARA [auth AG]256Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 45
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL6ASA [auth AH]191Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 46
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL16TA [auth AI]221Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 47
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L11-AUA [auth AJ]174Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 48
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L13-AVA [auth AL]199Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 49
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L14-AWA [auth AM]138Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 50
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL15AXA [auth AN]204Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 51
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL13AYA [auth AO]199Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 52
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L17-AZA [auth AP]184Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 53
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L18-AAB [auth AQ]186Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 54
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L19-ABB [auth AR]189Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 55
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL20ACB [auth AS]178Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 56
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L21-ADB [auth AT]160Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 57
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L22-AEB [auth AU]121Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 58
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L23-AFB [auth AV]137Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 59
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL24AGB [auth AW]155Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 60
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L25HB [auth AX]142Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 61
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L26-AIB [auth AY]127Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 62
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L27-AJB [auth AZ]136Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 63
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L28KB [auth Aa]149Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 64
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL29LB [auth Ab]59Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 65
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L30MB [auth Ac]105Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 66
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L31-ANB [auth Ad]113Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 67
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L32OB [auth Ae]130Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 68
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L33-APB [auth Af]107Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 69
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L34-AQB [auth Ag]121Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 70
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L35-ARB [auth Ah]120Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 71
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L36-ASB [auth Ai]100Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 72
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L37-ATB [auth Aj]88Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 73
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L38UB [auth Ak]78Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 74
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L39VB [auth Al]51Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 75
MoleculeChains  Sequence LengthOrganismDetailsImage
Ubiquitin-ribosomal protein eL40A fusion proteinWB [auth Am]128Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 76
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS32AXB [auth An]25Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 77
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL42AYB [auth Ao]106Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 78
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L43-AZB [auth Ap]92Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 34
MoleculeChains LengthOrganismImage
18S rRNAHA [auth B5]1,798Saccharomyces cerevisiae BY4741
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Entity ID: 38
MoleculeChains LengthOrganismImage
25S rRNALA [auth A1]3,184Saccharomyces cerevisiae BY4741
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Entity ID: 39
MoleculeChains LengthOrganismImage
5S rRNAMA [auth A3]121Saccharomyces cerevisiae BY4741
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Entity ID: 40
MoleculeChains LengthOrganismImage
5.8S rRNANA [auth A4]158Saccharomyces cerevisiae BY4741
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Reference Sequence

Small Molecules

Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN

Query on ZN



Download:Ideal Coordinates CCD File
TJ [auth Ao]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
K

Query on K



Download:Ideal Coordinates CCD File
AJ [auth A1]
BJ [auth A1]
CJ [auth A1]
DJ [auth A1]
EJ [auth A1]
AJ [auth A1],
BJ [auth A1],
CJ [auth A1],
DJ [auth A1],
EJ [auth A1],
FJ [auth A1],
GJ [auth A1],
HJ [auth A1],
IJ [auth A1],
JD [auth B5],
JJ [auth A1],
KD [auth B5],
KJ [auth A1],
LD [auth B5],
LJ [auth A1],
MD [auth B5],
ND [auth B5],
OD [auth B5],
PD [auth B5],
QD [auth B5],
QJ [auth Ab],
RJ [auth Ae],
VI [auth A1],
WI [auth A1],
XI [auth A1],
YI [auth A1],
ZI [auth A1]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG

Query on MG



Download:Ideal Coordinates CCD File
AC [auth B5]
AD [auth B5]
AE [auth A1]
AF [auth A1]
AG [auth A1]
AC [auth B5],
AD [auth B5],
AE [auth A1],
AF [auth A1],
AG [auth A1],
AH [auth A1],
AI [auth A1],
BC [auth B5],
BD [auth B5],
BE [auth A1],
BF [auth A1],
BG [auth A1],
BH [auth A1],
BI [auth A1],
CC [auth B5],
CD [auth B5],
CE [auth A1],
CF [auth A1],
CG [auth A1],
CH [auth A1],
CI [auth A1],
DC [auth B5],
DD [auth B5],
DE [auth A1],
DF [auth A1],
DG [auth A1],
DH [auth A1],
DI [auth A1],
EC [auth B5],
ED [auth B5],
EE [auth A1],
EF [auth A1],
EG [auth A1],
EH [auth A1],
EI [auth A1],
FC [auth B5],
FD [auth B5],
FE [auth A1],
FF [auth A1],
FG [auth A1],
FH [auth A1],
FI [auth A1],
GC [auth B5],
GD [auth B5],
GE [auth A1],
GF [auth A1],
GG [auth A1],
GH [auth A1],
GI [auth A1],
HC [auth B5],
HD [auth B5],
HE [auth A1],
HF [auth A1],
HG [auth A1],
HH [auth A1],
HI [auth A1],
IC [auth B5],
ID [auth B5],
IE [auth A1],
IF [auth A1],
IG [auth A1],
IH [auth A1],
II [auth A1],
JC [auth B5],
JE [auth A1],
JF [auth A1],
JG [auth A1],
JH [auth A1],
JI [auth A1],
KC [auth B5],
KE [auth A1],
KF [auth A1],
KG [auth A1],
KH [auth A1],
KI [auth A1],
LC [auth B5],
LE [auth A1],
LF [auth A1],
LG [auth A1],
LH [auth A1],
LI [auth A1],
MC [auth B5],
ME [auth A1],
MF [auth A1],
MG [auth A1],
MH [auth A1],
MI [auth A1],
MJ [auth A3],
NC [auth B5],
NE [auth A1],
NF [auth A1],
NG [auth A1],
NH [auth A1],
NI [auth A1],
NJ [auth A4],
OC [auth B5],
OE [auth A1],
OF [auth A1],
OG [auth A1],
OH [auth A1],
OI [auth A1],
OJ [auth AP],
PC [auth B5],
PE [auth A1],
PF [auth A1],
PG [auth A1],
PH [auth A1],
PI [auth A1],
PJ [auth AV],
QC [auth B5],
QE [auth A1],
QF [auth A1],
QG [auth A1],
QH [auth A1],
QI [auth A1],
RC [auth B5],
RD [auth A1],
RE [auth A1],
RF [auth A1],
RG [auth A1],
RH [auth A1],
RI [auth A1],
SC [auth B5],
SD [auth A1],
SE [auth A1],
SF [auth A1],
SG [auth A1],
SH [auth A1],
SI [auth A1],
SJ [auth Aj],
TC [auth B5],
TD [auth A1],
TE [auth A1],
TF [auth A1],
TG [auth A1],
TH [auth A1],
TI [auth A1],
UC [auth B5],
UD [auth A1],
UE [auth A1],
UF [auth A1],
UG [auth A1],
UH [auth A1],
UI [auth A1],
VC [auth B5],
VD [auth A1],
VE [auth A1],
VF [auth A1],
VG [auth A1],
VH [auth A1],
WC [auth B5],
WD [auth A1],
WE [auth A1],
WF [auth A1],
WG [auth A1],
WH [auth A1],
XC [auth B5],
XD [auth A1],
XE [auth A1],
XF [auth A1],
XG [auth A1],
XH [auth A1],
YC [auth B5],
YD [auth A1],
YE [auth A1],
YF [auth A1],
YG [auth A1],
YH [auth A1],
ZC [auth B5],
ZD [auth A1],
ZE [auth A1],
ZF [auth A1],
ZG [auth A1],
ZH [auth A1]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
HIC
Query on HIC
JA [auth AB]L-PEPTIDE LINKINGC7 H11 N3 O2HIS

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.75 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419:
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM124622
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM101343

Revision History  (Full details and data files)

  • Version 1.0: 2026-05-20
    Type: Initial release