9OYT | pdb_00009oyt

Structure of T61I D2-NT amyloid fibrils


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report

Validation slider image for 9OYT

This is version 1.1 of the entry. See complete history

Literature

Amyloid fibril structures link CHCHD10 and CHCHD2 to neurodegeneration.

Lv, G.Sayles, N.M.Huang, Y.Mancinelli, C.McAvoy, K.Shneider, N.A.Manfredi, G.Kawamata, H.Eliezer, D.

(2025) Nat Commun 16: 7121-7121

  • DOI: https://doi.org/10.1038/s41467-025-62149-3
  • Primary Citation Related Structures: 
    9CWW, 9OYO, 9OYQ, 9OYR, 9OYS, 9OYT, 9OYW

  • PubMed Abstract: 

    Mitochondrial proteins CHCHD10 and CHCHD2 are mutated in rare cases of heritable FTD, ALS and PD and aggregate in tissues affected by these diseases. Here, we show that both proteins form amyloid fibrils and report cryo-EM structures of fibrils formed from their disordered N-terminal domains. The ordered cores of these fibrils are comprised of a region highly conserved between the two proteins, and a subset of the CHCHD10 and CHCHD2 fibril structures share structural similarities and appear compatible with sequence variations in this region. In contrast, disease-associated mutations p.S59L in CHCHD10 and p.T61I in CHCHD2, situated within the ordered cores of these fibrils, cannot be accommodated by the wildtype structures and promote different protofilament folds and fibril structures. These results link CHCHD10 and CHCHD2 amyloid fibrils to neurodegeneration and further suggest that fibril formation by the WT proteins could also be involved in disease etiology.


  • Organizational Affiliation
    • Department of Biochemistry, Weill Cornell Medicine, 1300 York Avenue, New York, NY, USA.

Macromolecule Content 

  • Total Structure Weight: 204.85 kDa 
  • Atom Count: 3,834 
  • Modeled Residue Count: 612 
  • Deposited Residue Count: 2,052 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Coiled-coil-helix-coiled-coil-helix domain-containing protein 2114Homo sapiensMutation(s): 1 
Gene Names: CHCHD2C7orf17AAG10
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y6H1 (Homo sapiens)
Explore Q9Y6H1 
Go to UniProtKB:  Q9Y6H1
PHAROS:  Q9Y6H1
GTEx:  ENSG00000106153 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y6H1
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)United StatesRF1AG066493

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-30
    Type: Initial release
  • Version 1.1: 2025-08-13
    Changes: Data collection, Database references