9OW5 | pdb_00009ow5

Hedgehog coronavirus ErinCoV-Ger12 spike receptor binding domain in complex with hedgehog APN (locally refined)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.99 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

Hedgehog coronavirus ErinCoV-Ger12 spike receptor binding domain in complex with hedgehog APN (locally refined)

Jin, M.Rini, J.M.

To be published.

Macromolecule Content 

  • Total Structure Weight: 131.14 kDa 
  • Atom Count: 9,383 
  • Modeled Residue Count: 1,113 
  • Deposited Residue Count: 1,114 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Aminopeptidase900Erinaceus europaeusMutation(s): 0 
Gene Names: ANPEP
EC: 3.4.11
UniProt
Find proteins for A0A1S2ZAK1 (Erinaceus europaeus)
Explore A0A1S2ZAK1 
Go to UniProtKB:  A0A1S2ZAK1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1S2ZAK1
Glycosylation
Glycosylation Sites: 10
Sequence Annotations
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Amastatin4StreptomycesMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Spike glycoprotein210Betacoronavirus ErinaceusMutation(s): 0 
UniProt
Find proteins for U5LMM7 (Betacoronavirus Erinaceus/VMC/DEU/2012)
Explore U5LMM7 
Go to UniProtKB:  U5LMM7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupU5LMM7
Glycosylation
Glycosylation Sites: 2
Sequence Annotations
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Reference Sequence

Oligosaccharides

Help  
Entity ID: 4
MoleculeChains Length2D Diagram GlycosylationD Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
D, E, F, G, J
D, E, F, G, J, K
2N-Glycosylation
Entity ID: 5
MoleculeChains Length2D Diagram GlycosylationD Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
H
3N-Glycosylation
Entity ID: 6
MoleculeChains Length2D Diagram GlycosylationD Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
I
3N-Glycosylation

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.99 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)Canada--

Revision History  (Full details and data files)

  • Version 1.0: 2026-07-08
    Type: Initial release