9OKR | pdb_00009okr

CryoEM structure of the E. coli zinc ABC transporter ZnuB-ZnuC treated with EDTA

PDB DOI: https://doi.org/10.2210/pdb9OKR/pdb
EM Map EMD-70573: EMDB EMDataResource

Classification: METAL TRANSPORT
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-05-11 Released: 2026-05-27
Deposition Author(s): Pang, C., Nguyen, H., Zhang, Q., Bahar, I., Liu, Q.
Funding Organization(s): Department of Energy (DOE, United States), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural mechanism of transport and regulation in zinc ABC transporters

Pang, C., Nguyen, H., Zhang, Q., Bahar, I., Liu, Q.

To be published.

Macromolecule Content

Total Structure Weight: 111.14 kDa
Atom Count: 6,936
Modeled Residue Count: 918
Deposited Residue Count: 1,022
Unique protein chains: 2

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
High-affinity zinc uptake system membrane protein ZnuB	A [auth B], B [auth C]	260	Escherichia coli	Mutation(s): 0 Gene Names: znuB, ACU57_21190, BANRA_00316, BANRA_02430, BGM66_000403, BTB68_002643, BvCmsKKP061_01839, CIG67_05295, CTR35_000327, DL968_14210... znuB, ACU57_21190, BANRA_00316, BANRA_02430, BGM66_000403, BTB68_002643, BvCmsKKP061_01839, CIG67_05295, CTR35_000327, DL968_14210, E4K51_14025, FV293_18615, GNW61_11860, HEP30_000365, HV109_09645, HVY77_11070, HX136_14520, IH772_04995, J0541_002655, JNP96_15900, NCTC9045_02550, NCTC9706_04197, P6223_004059, WR15_05640
UniProt
Find proteins for A0A037YFR8 (Escherichia coli) Explore A0A037YFR8 Go to UniProtKB: A0A037YFR8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A037YFR8
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
High-affinity zinc transporter ATPase	C [auth D], D [auth E]	251	Escherichia coli	Mutation(s): 0 Gene Names: znuC, A2J79_001074, A5U30_001163, ACU57_21195, BANRA_00317, BANRA_02431, BANRA_02514, BCB93_003247, BG944_000027, BGM66_000402... znuC, A2J79_001074, A5U30_001163, ACU57_21195, BANRA_00317, BANRA_02431, BANRA_02514, BCB93_003247, BG944_000027, BGM66_000402, BK300_16825, BMT50_21810, BRV02_002415, BTB68_002642, BTQ06_04850, BXT93_21735, C1Q91_000377, C2M16_13800, C3F40_01300, C6669_19850, C719_002992, C7B02_20610, C9160_10450, C9194_08065, C9Z68_01535, CCS08_13535, CF22_000585, CG702_12665, CQ842_19325, CQ842_23670, CR538_10995, CTR35_000328, CV83915_04524, CWS33_16780, D3C88_04030, D3G36_01205, D4M65_03190, D4N09_01590, D9D43_05570, D9E49_20460, D9J61_10795, DIV22_08075, DNQ45_17740, DNX30_00600, DS732_15065, DTL43_11940, E2863_02289, E4K51_14030, E5H86_06985, ECs2568, EIZ93_04035, EN85_003613, EPS76_02960, EPS97_03255, EWK56_00630, ExPECSC038_01829, F7N46_03360, F9413_08505, F9B07_11365, FIJ20_05915, FOI11_003745, FOI11_16300, FPI65_11335, FV293_18620, FWK02_10230, FZU14_05085, G3V95_04575, GAI89_19405, GAJ12_12690, GKF66_00585, GP711_12565, GP965_18825, GP975_02130, GQM04_11170, GQM13_04265, GQM21_03700, GQN24_19110, GRC73_10315, GRW05_21245, GRW24_03220, GTP92_01415, GUC01_04420, HHH44_001583, HIE29_000800, HJQ60_004185, HKA49_000112, HLX92_06100, HLZ50_02640, HMV95_00340, HV209_08835, HVV39_26730, HVW04_01375, HX136_14515, I6H02_03380, IFC14_003186, J0541_002654, J5U05_000290, J8F57_003353, JNA68_05840, JNP96_15895, NCTC10418_03224, NCTC10429_03242, NCTC11181_00047, NCTC11341_06009, NCTC7922_02602, NCTC7927_02343, NCTC7928_06155, NCTC8500_02381, NCTC8603_01712, NCTC9045_02551, NCTC9073_05913, NCTC9702_02523, NOI85_06935, NY836_03130, OFN31_18900, OGM49_13630, P6223_004058, PWL68_004606, Q2V20_18870, Q2V64_09685, R8O40_000625, RZR61_00940, SAMEA3472044_01370, V9Z47_15460 EC: 3.6.3
UniProt
Find proteins for C3T5S7 (Escherichia coli) Explore C3T5S7 Go to UniProtKB: C3T5S7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C3T5S7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.18.2_3874:

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-05-27

Deposition Author(s):

Funding Organization	Location	Grant Number
Department of Energy (DOE, United States)	United States	--
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--