9N2F | pdb_00009n2f

Cryo-EM structure of F. johnsoniae BamAD

PDB DOI: https://doi.org/10.2210/pdb9N2F/pdb
EM Map EMD-48837: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Flavobacterium johnsoniae UW101
Mutation(s): No
Membrane Protein: Yes MemProtMD

Deposited: 2025-01-28 Released: 2025-07-16
Deposition Author(s): Deme, J.C., Lea, S.M.
Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9N2F

This is version 1.0 of the entry. See complete history.

Literature

An extended BAM complex in the Bacteroidota

Liu, X., Orenday Tapia, L., Deme, J.C., Lea, S.M., Berks, B.C.

To be published.

Macromolecule Content

Total Structure Weight: 131.71 kDa
Atom Count: 7,600
Modeled Residue Count: 948
Deposited Residue Count: 1,164
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA uptake lipoprotein-like protein	A [auth F]	264	Flavobacterium johnsoniae UW101	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for A5FE81 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101)) Explore A5FE81 Go to UniProtKB: A5FE81
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A5FE81
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Surface antigen (D15)	B [auth A]	900	Flavobacterium johnsoniae UW101	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for A5FJ90 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101)) Explore A5FJ90 Go to UniProtKB: A5FJ90
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A5FJ90
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	dev_5533
RECONSTRUCTION	cryoSPARC

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-07-16

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	CCR Core Funding for Lea Group

Revision History (Full details and data files)

Version 1.0: 2025-07-16
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.