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 9MOH | pdb_00009moh

Structure of the middle part of the bacteriophage T4 tail


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9MOH

This is version 1.1 of the entry. See complete history. 

Literature

In situ structures of the portal-neck-tail complex of bacteriophage T4 inform a viral genome positioning mechanism.

Fokine, A., Zhu, J., Klose, T., Vago, F., Arnaud, C.A., Wang, Z., Khare, B., Rossmann, M.G., Chen, Z., Sun, L., Fang, Q., Kuhn, R.J., Rao, V.B.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-69106-8
  • Primary Citation Related Structures: 
    9MKB, 9MOF, 9MOG, 9MOH

  • PubMed Abstract: 

    The post-genome packaging mechanisms that govern the assembly of an infectious virion are poorly understood in bacteriophages and other viruses. Here, our near-atomic resolution cryo-EM structural analyses uncovered an assembly- and conformation-driven genome positioning mechanism in the tailed bacteriophage T4. We show that following headful packaging, which generates a pressurized head, a global conformational change occurs in the portal structure, probably triggering packaging termination and ejection of the packaging motor. Our high-resolution structures of the neck of the virion further show that the neck undergoes conformational changes upon docking of a pre-assembled tail onto the sealed neck, which then opens a genome-gate. Driven by the pressure of the packaged DNA, the genome travels through open neck channels, binds and compresses the resident tape-measure protein, and halts at the bottom of the second topmost disk of the tail tube. Pressure-suspended within the virion's innermost tunnel and secured by a baseplate plug, the genome remains poised to flow through the tunnel into a host cell upon receiving the host receptor recognition signal.


  • Organizational Affiliation: 
    • Department of Biological Sciences, Purdue University, West Lafayette, IN, USA. afokine@purdue.edu.

Macromolecule Content 

  • Total Structure Weight: 7,434.69 kDa 
  • Atom Count: 521,712 
  • Modeled Residue Count: 67,734 
  • Deposited Residue Count: 68,070 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
gp18, tail sheath protein659Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for A0A7S9SVW9 (Escherichia phage T4)
Explore A0A7S9SVW9 
Go to UniProtKB:  A0A7S9SVW9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7S9SVW9
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
gp19, tail tube protein163Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for A0A7S9SVI2 (Escherichia phage T4)
Explore A0A7S9SVI2 
Go to UniProtKB:  A0A7S9SVI2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7S9SVI2
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.1_5286

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI081726

Revision History  (Full details and data files)

  • Version 1.0: 2026-01-28
    Type: Initial release
  • Version 1.1: 2026-08-12
    Changes: Data collection, Database references