9MDU | pdb_00009mdu

Human CXCR4 tetramer

PDB DOI: https://doi.org/10.2210/pdb9MDU/pdb
EM Map EMD-48180: EMDB EMDataResource

Classification: SIGNALING PROTEIN
Organism(s): Mammalia
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2024-12-05 Released: 2025-09-10
Deposition Author(s): Zhang, Z., Patel, D.J., Junyu, X.
Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9MDU

This is version 1.0 of the entry. See complete history.

Literature

human CXCR4 tetramer

Zhang, Z., Dinshaw, J.P., Junyu, X.

To be published.

Macromolecule Content

Total Structure Weight: 163.14 kDa
Atom Count: 9,123
Modeled Residue Count: 1,124
Deposited Residue Count: 1,440
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
C-X-C chemokine receptor type 4	A [auth B], B [auth A], C, D	360	Mammalia	Mutation(s): 0 Gene Names: CXCR4
UniProt & NIH Common Fund Data Resources
Find proteins for P61073 (Homo sapiens) Explore P61073 Go to UniProtKB: P61073
PHAROS: P61073 GTEx: ENSG00000121966
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P61073
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-09-10

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	P30 CA008748

Revision History (Full details and data files)

Version 1.0: 2025-09-10
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.