9LNO | pdb_00009lno

human Betaine/GABA transporter 1 in inward facing conformation

• PDB DOI: https://doi.org/10.2210/pdb9LNO/pdb
• EM Map EMD-63238: EMDB EMDataResource

• Classification: PROTEIN TRANSPORT
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2025-01-21 Released: 2026-01-28 
• Deposition Author(s): Zhao, Y., Hao, K.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural basis of transportation mechanism of hBGT1

Zhao, Y., Xu, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 70.42 kDa 
• Atom Count: 4,335 
• Modeled Residue Count: 530 
• Deposited Residue Count: 614 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sodium- and chloride-dependent betaine transporter	A	614	Homo sapiens	Mutation(s): 0  Gene Names: SLC6A12, BGT1
UniProt & NIH Common Fund Data Resources
Find proteins for P48065 (Homo sapiens) Explore P48065  Go to UniProtKB:  P48065
PHAROS:  P48065 GTEx:  ENSG00000111181

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
Y01 (Subject of Investigation/LOI)	B [auth A], C [auth A]	CHOLESTEROL HEMISUCCINATE C31 H50 O4 WLNARFZDISHUGS-MIXBDBMTSA-N
CL (Subject of Investigation/LOI)	D [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Resolution: 3.15 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2026-01-28 
Deposition Author(s): Zhao, Y., Hao, K.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2026-01-28
  Type: Initial release