9L7S | pdb_00009l7s

Crystal structure of P450 BM3 F87A/V78S mutant

PDB DOI: https://doi.org/10.2210/pdb9L7S/pdb

Classification: OXIDOREDUCTASE
Organism(s): Priestia megaterium
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2024-12-27 Released: 2026-01-07
Deposition Author(s): Dong, S., Feng, Y.G.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.248 (Depositor), 0.248 (DCC)
R-Value Work:
0.208 (Depositor), 0.208 (DCC)
R-Value Observed:
0.210 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of P450cam-F87R mutant

Dong, S., Feng, Y.G.

To be published.

Macromolecule Content

Total Structure Weight: 423.63 kDa
Atom Count: 31,501
Modeled Residue Count: 3,640
Deposited Residue Count: 3,648
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bifunctional cytochrome P450/NADPH--P450 reductase	A, B, C, D, E A, B, C, D, E, F, G, H	456	Priestia megaterium	Mutation(s): 2 EC: 1.14.14.1 (PDB Primary Data), 1.6.2.4 (PDB Primary Data)
UniProt
Find proteins for F2Q7T0 (Priestia megaterium) Explore F2Q7T0 Go to UniProtKB: F2Q7T0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	F2Q7T0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HEM (Subject of Investigation/LOI) Query on HEM Download:Ideal Coordinates CCD File SDF format, chain DA [auth H] SDF format, chain L [auth B] SDF format, chain O [auth C] SDF format, chain U [auth E] SDF format, chain X [auth F] SDF format, chain R [auth D] SDF format, chain I [auth A] SDF format, chain AA [auth G] MOL2 format, chain DA [auth H] MOL2 format, chain L [auth B] MOL2 format, chain O [auth C] MOL2 format, chain U [auth E] MOL2 format, chain X [auth F] MOL2 format, chain R [auth D] MOL2 format, chain I [auth A] MOL2 format, chain AA [auth G] mmCIF format, chain DA [auth H] mmCIF format, chain L [auth B] mmCIF format, chain O [auth C] mmCIF format, chain U [auth E] mmCIF format, chain X [auth F] mmCIF format, chain R [auth D] mmCIF format, chain I [auth A] mmCIF format, chain AA [auth G]	AA [auth G] DA [auth H] I [auth A] L [auth B] O [auth C] AA [auth G], DA [auth H], I [auth A], L [auth B], O [auth C], R [auth D], U [auth E], X [auth F]	PROTOPORPHYRIN IX CONTAINING FE C₃₄ H₃₂ Fe N₄ O₄ KABFMIBPWCXCRK-RGGAHWMASA-L		Interactions Focus chain AA [auth G] Focus chain DA [auth H] Focus chain I [auth A] Focus chain L [auth B] Focus chain O [auth C] Focus chain R [auth D] Focus chain U [auth E] Focus chain X [auth F] Interactions & Density Focus chain AA [auth G] Focus chain DA [auth H] Focus chain I [auth A] Focus chain L [auth B] Focus chain O [auth C] Focus chain R [auth D] Focus chain U [auth E] Focus chain X [auth F]
EDO (Subject of Investigation/LOI) Query on EDO Download:Ideal Coordinates CCD File SDF format, chain FA [auth H] SDF format, chain M [auth B] SDF format, chain S [auth D] SDF format, chain V [auth E] SDF format, chain Z [auth F] SDF format, chain Y [auth F] SDF format, chain W [auth E] SDF format, chain T [auth D] SDF format, chain Q [auth C] SDF format, chain P [auth C] SDF format, chain N [auth B] SDF format, chain K [auth A] SDF format, chain J [auth A] SDF format, chain EA [auth H] SDF format, chain CA [auth G] SDF format, chain BA [auth G] MOL2 format, chain FA [auth H] MOL2 format, chain M [auth B] MOL2 format, chain S [auth D] MOL2 format, chain V [auth E] MOL2 format, chain Z [auth F] MOL2 format, chain Y [auth F] MOL2 format, chain W [auth E] MOL2 format, chain T [auth D] MOL2 format, chain Q [auth C] MOL2 format, chain P [auth C] MOL2 format, chain N [auth B] MOL2 format, chain K [auth A] MOL2 format, chain J [auth A] MOL2 format, chain EA [auth H] MOL2 format, chain CA [auth G] MOL2 format, chain BA [auth G] mmCIF format, chain FA [auth H] mmCIF format, chain M [auth B] mmCIF format, chain S [auth D] mmCIF format, chain V [auth E] mmCIF format, chain Z [auth F] mmCIF format, chain Y [auth F] mmCIF format, chain W [auth E] mmCIF format, chain T [auth D] mmCIF format, chain Q [auth C] mmCIF format, chain P [auth C] mmCIF format, chain N [auth B] mmCIF format, chain K [auth A] mmCIF format, chain J [auth A] mmCIF format, chain EA [auth H] mmCIF format, chain CA [auth G] mmCIF format, chain BA [auth G]	BA [auth G] CA [auth G] EA [auth H] FA [auth H] J [auth A] BA [auth G], CA [auth G], EA [auth H], FA [auth H], J [auth A], K [auth A], M [auth B], N [auth B], P [auth C], Q [auth C], S [auth D], T [auth D], V [auth E], W [auth E], Y [auth F], Z [auth F]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain BA [auth G] Focus chain CA [auth G] Focus chain EA [auth H] Focus chain FA [auth H] Focus chain J [auth A] Focus chain K [auth A] Focus chain M [auth B] Focus chain N [auth B] Focus chain P [auth C] Focus chain Q [auth C] Focus chain S [auth D] Focus chain T [auth D] Focus chain V [auth E] Focus chain W [auth E] Focus chain Y [auth F] Focus chain Z [auth F] Interactions & Density Focus chain BA [auth G] Focus chain CA [auth G] Focus chain EA [auth H] Focus chain FA [auth H] Focus chain J [auth A] Focus chain K [auth A] Focus chain M [auth B] Focus chain N [auth B] Focus chain P [auth C] Focus chain Q [auth C] Focus chain S [auth D] Focus chain T [auth D] Focus chain V [auth E] Focus chain W [auth E] Focus chain Y [auth F] Focus chain Z [auth F]