9L5W | pdb_00009l5w

FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis

PDB DOI: https://doi.org/10.2210/pdb9L5W/pdb
EM Map EMD-62847: EMDB EMDataResource

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-12-23 Released: 2025-12-31
Deposition Author(s): Tan, Y.B., Luo, D.
Funding Organization(s): National Research Foundation (NRF, Singapore)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.60 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis

Tan, Y.B., Luo, D.

To be published.

Macromolecule Content

Total Structure Weight: 181.88 kDa
Atom Count: 11,682
Modeled Residue Count: 1,458
Deposited Residue Count: 1,638
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FAS-associated death domain protein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	91	Homo sapiens	Mutation(s): 0 Gene Names: FADD, MORT1, GIG3
UniProt & NIH Common Fund Data Resources
Find proteins for Q13158 (Homo sapiens) Explore Q13158 Go to UniProtKB: Q13158
PHAROS: Q13158 GTEx: ENSG00000168040
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q13158
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.60 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC
MODEL REFINEMENT	PHENIX	1.20.1_4487:
MODEL REFINEMENT	Coot

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-12-31

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Singapore)	Singapore	NRF-CRP26-2021-0001

Revision History (Full details and data files)

Version 1.0: 2025-12-31
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.