9KVI | pdb_00009kvi

Deposited: 2024-12-05 Released: 2025-12-03
Deposition Author(s): Yuan, Q., Li, S.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Yuan, Q., Li, S.

To be published.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(i) subunit alpha-1	A	354	Homo sapiens	Mutation(s): 0 Gene Names: GNAI1 EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P63096 (Homo sapiens) Explore P63096 Go to UniProtKB: P63096
PHAROS: P63096 GTEx: ENSG00000127955
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P63096
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	B	344	Homo sapiens	Mutation(s): 0 Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens) Explore P62873 Go to UniProtKB: P62873
PHAROS: P62873 GTEx: ENSG00000078369
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62873
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
SCFV16	C [auth E]	247	Homo sapiens	Mutation(s): 0

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2	D [auth G]	71	Homo sapiens	Mutation(s): 0 Gene Names: GNG2
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens) Explore P59768 Go to UniProtKB: P59768
PHAROS: P59768 GTEx: ENSG00000186469
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P59768
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Reference Sequence

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| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
5-hydroxytryptamine receptor 1A	E [auth R]	398	Homo sapiens	Mutation(s): 0 Gene Names: HTR1A, ADRB2RL1, ADRBRL1
UniProt & NIH Common Fund Data Resources
Find proteins for P08908 (Homo sapiens) Explore P08908 Go to UniProtKB: P08908
PHAROS: P08908 GTEx: ENSG00000178394
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P08908
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Reference Sequence

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
J40 Query on J40 Download:Ideal Coordinates CCD File SDF format, chain I [auth R] MOL2 format, chain I [auth R] mmCIF format, chain I [auth R]	I [auth R]	[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate C₃₉ H₆₈ O₁₆ P₂ KFDYJTVTHSTWNE-UDQXHECVSA-N		Interactions Focus chain I [auth R] Interactions & Density Focus chain I [auth R]
CHO Query on CHO Download:Ideal Coordinates CCD File SDF format, chain G [auth R] MOL2 format, chain G [auth R] mmCIF format, chain G [auth R]	G [auth R]	GLYCOCHENODEOXYCHOLIC ACID C₂₆ H₄₃ N O₅ GHCZAUBVMUEKKP-GYPHWSFCSA-N		Interactions Focus chain G [auth R] Interactions & Density Focus chain G [auth R]
CLR Query on CLR Download:Ideal Coordinates CCD File SDF format, chain H [auth R] MOL2 format, chain H [auth R] mmCIF format, chain H [auth R]	H [auth R]	CHOLESTEROL C₂₇ H₄₆ O HVYWMOMLDIMFJA-DPAQBDIFSA-N		Interactions Focus chain H [auth R] Interactions & Density Focus chain H [auth R]
A1EG8 (Subject of Investigation/LOI) Query on A1EG8 Download:Ideal Coordinates CCD File SDF format, chain F [auth R] MOL2 format, chain F [auth R] mmCIF format, chain F [auth R]	F [auth R]	Bufotenin C₁₂ H₁₆ N₂ O VTTONGPRPXSUTJ-UHFFFAOYSA-N		Interactions Focus chain F [auth R] Interactions & Density Focus chain F [auth R]