9JPH | pdb_00009jph

crRNA-guided surveillance (Csy) complex

PDB DOI: https://doi.org/10.2210/pdb9JPH/pdb
NAKB: 9JPH
EM Map EMD-61700: EMDB EMDataResource

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Pseudomonas aeruginosa UCBPP-PA14
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2024-09-26 Released: 2026-04-01
Deposition Author(s): Wang, W.H., Guan, L.L., Du, X.Y., Feng, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9JPH

This is version 1.0 of the entry. See complete history.

Literature

crRNA-guided surveillance (Csy) complex

Wang, W.H., Guan, L.L., Du, X.Y., Feng, Y.

To be published.

Macromolecule Content

Total Structure Weight: 334.32 kDa
Atom Count: 21,469
Modeled Residue Count: 2,706
Deposited Residue Count: 2,912
Unique protein chains: 3
Unique nucleic acid chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Type I-F CRISPR-associated protein Csy1	A	473	Pseudomonas aeruginosa UCBPP-PA14	Mutation(s): 0 Gene Names: csy1, F7O97_17165
UniProt
Find proteins for A0A643IV20 (Pseudomonas aeruginosa) Explore A0A643IV20 Go to UniProtKB: A0A643IV20
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A643IV20
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Type I-F CRISPR-associated protein Csy2	B	327	Pseudomonas aeruginosa UCBPP-PA14	Mutation(s): 0 Gene Names: csy2, F7O97_17160
UniProt
Find proteins for A0A643IWA1 (Pseudomonas aeruginosa) Explore A0A643IWA1 Go to UniProtKB: A0A643IWA1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A643IWA1
Sequence Annotations Expand
Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Type I-F CRISPR-associated protein Csy3	C, D, E, F, G C, D, E, F, G, H	342	Pseudomonas aeruginosa UCBPP-PA14	Mutation(s): 0 Gene Names: csy3, F7O97_17155
UniProt
Find proteins for A0A643IYA9 (Pseudomonas aeruginosa) Explore A0A643IYA9 Go to UniProtKB: A0A643IYA9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A643IYA9
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff)

Molecule	Chains	Length	Organism	Image
Entity ID: 4
RNA (60-MER)	I [auth J]	60	Pseudomonas aeruginosa UCBPP-PA14
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-04-01

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32000901

Revision History (Full details and data files)

Version 1.0: 2026-04-01
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.