9JJG

Cryo-EM structure of RHDV GI.2 virion

• PDB DOI: https://doi.org/10.2210/pdb9JJG/pdb
• EM Map EMD-61526: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Rabbit hemorrhagic disease virus 2
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2024-09-13 Released: 2024-10-16 
• Deposition Author(s): Ruan, Z., Shao, Q., Song, Y., Hu, B., Fan, Z., Wei, H., Liu, Y., Wang, F., Fang, Q.
• Funding Organization(s): 100 Talents Plan Foundation of Sun Yat-sen University, China Agriculture Research System, Jiangsu Provincial Agricultural Science and Technology, Shenzhen Science and Technology Program

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.46 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Near-atomic structures of RHDV reveal insights into capsid assembly and different conformations between mature virion and VLP

Ruan, Z., Shao, Q., Song, Y., Hu, B., Fan, Z., Wei, H., Liu, Y., Wang, F., Fang, Q.

(2014) J Virol 

• DOI: https://doi.org/10.1128/jvi.01275-24

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 180-mer - A180 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 181.26 kDa 
• Atom Count: 11,818 
• Modelled Residue Count: 1,593 
• Deposited Residue Count: 1,737 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Genome polyprotein	A, B, C	579	Rabbit hemorrhagic disease virus 2	Mutation(s): 0
UniProt
Find proteins for A0A3S8Q1D6 (Rabbit hemorrhagic disease virus 2) Explore A0A3S8Q1D6  Go to UniProtKB:  A0A3S8Q1D6

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.46 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	4.0

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-10-16 
Deposition Author(s): Ruan, Z., Shao, Q., Song, Y., Hu, B., Fan, Z., Wei, H., Liu, Y., Wang, F., Fang, Q.

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Funding Organization	Location	Grant Number
100 Talents Plan Foundation of Sun Yat-sen University	China	--
China Agriculture Research System	China	CARS-43-C-1
Jiangsu Provincial Agricultural Science and Technology	China	CX(23)1028
Shenzhen Science and Technology Program	China	ZDSYS20230626091203007

Revision History  

• Version 1.0: 2024-10-16
  Type: Initial release