9JJ3 | pdb_00009jj3

Cryo-EM structure of human ZnT4 D150N/D281N

PDB DOI: https://doi.org/10.2210/pdb9JJ3/pdb
EM Map EMD-61516: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): Yes
Membrane Protein: Yes MemProtMD

Deposited: 2024-09-12 Released: 2025-06-04
Deposition Author(s): Ishida, H., Yo, R., Zhnag, Z., Shimizu, T., Ohto, U.
Funding Organization(s): Ministry of Education, Culture, Sports, Science and Technology (Japan)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9JJ3

This is version 1.0 of the entry. See complete history.

Literature

Structural basis for the zinc transporters, ZnT3 and ZnT4

Ishida, H., Yo, R., Zhang, Z., Shimizu, T., Ohto, U.

To be published.

Macromolecule Content

Total Structure Weight: 98.94 kDa
Atom Count: 4,586
Modeled Residue Count: 582
Deposited Residue Count: 892
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable proton-coupled zinc antiporter SLC30A4	A [auth B], B [auth A]	446	Homo sapiens	Mutation(s): 2 Gene Names: SLC30A4, ZNT4 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for O14863 (Homo sapiens) Explore O14863 Go to UniProtKB: O14863
PHAROS: O14863 GTEx: ENSG00000104154
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O14863
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-06-04

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Education, Culture, Sports, Science and Technology (Japan)	Japan	20K16274 and 22K07131 (H.I.); 22K15046 and 24K09349 (Z.Z.); 19H00976, 22H05184, and 23H00366 (T.S.); and 19H03164 and 22H02556 [U.O.)

Revision History (Full details and data files)

Version 1.0: 2025-06-04
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.