The RNA polymerase II elongation complex from Saccharomyces cerevisiae
Ma, J., Yi, G., Zhang, P.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB1 | 1,733 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RPO21, RPB1, RPB220, SUA8, YDL140C, D2150 EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for P04050 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04050  Go to UniProtKB:  P04050 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04050 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB2 | 1,224 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RPB2, RPB150, RPO22, YOR151C EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for P08518 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P08518  Go to UniProtKB:  P08518 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P08518 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB3 | 318 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RPB3, YIL021W | ||
UniProt | |||||
Find proteins for P16370 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P16370  Go to UniProtKB:  P16370 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P16370 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases I, II, and III subunit RPABC1 | D [auth E] | 215 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RPB5, RPA7, RPC9, YBR154C, YBR1204 | |
UniProt | |||||
Find proteins for P20434 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P20434  Go to UniProtKB:  P20434 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20434 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases I, II, and III subunit RPABC2 | E [auth F] | 155 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RPO26, RPB6, YPR187W, P9677.8 | |
UniProt | |||||
Find proteins for P20435 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P20435  Go to UniProtKB:  P20435 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20435 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases I, II, and III subunit RPABC3 | F [auth H] | 146 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RPB8, YOR224C, YOR50-14 | |
UniProt | |||||
Find proteins for P20436 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P20436  Go to UniProtKB:  P20436 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20436 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases I, II, and III subunit RPABC5 | G [auth J] | 70 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RPB10, YOR210W | |
UniProt | |||||
Find proteins for P22139 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P22139  Go to UniProtKB:  P22139 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P22139 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB11 | H [auth K] | 120 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RPB11, YOL005C | |
UniProt | |||||
Find proteins for P38902 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38902  Go to UniProtKB:  P38902 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P38902 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases I, II, and III subunit RPABC4 | I [auth L] | 70 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RPC10, RPB12, YHR143W-A, YHR143BW | |
UniProt | |||||
Find proteins for P40422 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40422  Go to UniProtKB:  P40422 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P40422 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB4 | J [auth D] | 221 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RPB4, YJL140W, J0654 | |
UniProt | |||||
Find proteins for P20433 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P20433  Go to UniProtKB:  P20433 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20433 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB7 | K [auth G] | 171 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: RPB7, YDR404C, D9509.22 | |
UniProt | |||||
Find proteins for P34087 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P34087  Go to UniProtKB:  P34087 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P34087 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 12 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3') | L [auth R] | 9 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*GP*CP*TP*CP*CP*TP*TP*CP*TP*CP*CP*CP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*T)-3') | M [auth T] | 74 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*TP*GP*GP*GP*AP*GP*AP*AP*GP*GP*AP*GP*C)-3') | 74 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ATP Query on ATP | W [auth T] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N | |||
ZN Query on ZN | O [auth A] P [auth A] R [auth B] S [auth C] T [auth J] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | Q [auth A], V [auth R] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
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Wellcome Trust | United Kingdom | -- |