9J74 | pdb_00009j74

Cryo-EM structure of URAT1 in complex with lesinurad

PDB DOI: https://doi.org/10.2210/pdb9J74/pdb
EM Map EMD-61193: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Rattus norvegicus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2024-08-18 Released: 2025-11-19
Deposition Author(s): Zhao, Y., Yu, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9J74

This is version 1.0 of the entry. See complete history.

Literature

Transport and inhibition mechanisms of URAT1

Zhao, Y., Yu, Z.

To be published.

Macromolecule Content

Total Structure Weight: 60.66 kDa
Atom Count: 3,654
Modeled Residue Count: 472
Deposited Residue Count: 553
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Solute carrier family 22 member 12	A	553	Rattus norvegicus	Mutation(s): 0 Gene Names: Slc22a12, Urat1
UniProt
Find proteins for Q3ZAV1 (Rattus norvegicus) Explore Q3ZAV1 Go to UniProtKB: Q3ZAV1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q3ZAV1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1AIL (Subject of Investigation/LOI) Query on A1AIL Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	lesinurad C₁₇ H₁₄ Br N₃ O₂ S FGQFOYHRJSUHMR-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-11-19

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2025-11-19
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.