9IZV | pdb_00009izv

Cryo-EM structure of ALDH6A1-Y172H & R535C

PDB DOI: https://doi.org/10.2210/pdb9IZV/pdb
EM Map EMD-61043: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2024-08-01 Released: 2024-11-27
Deposition Author(s): Su, G., Xu, Y., Luan, X.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9IZV

This is version 1.0 of the entry. See complete history.

Literature

Structural and biochemical basis for the pathogenic mutations of methylmalonate semialdehyde dehydrogenase ALDH6A1

Su, G., Ju, K., Xu, Y., Jin, Y., Chen, L., Luan, X.

(2024) Medicine Plus 1: 100056

DOI: https://doi.org/10.1016/j.medp.2024.100056

Macromolecule Content

Total Structure Weight: 221.39 kDa
Atom Count: 14,118
Modeled Residue Count: 1,857
Deposited Residue Count: 2,036
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial	A, B, C, D	509	Homo sapiens	Mutation(s): 1 Gene Names: ALDH6A1, MMSDH EC: 1.2.1.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q02252 (Homo sapiens) Explore Q02252 Go to UniProtKB: Q02252
PHAROS: Q02252 GTEx: ENSG00000119711
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q02252
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-11-27

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2024-11-27
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.