9IQR | pdb_00009iqr

Cryo-EM structure of MT3-alpha2AAR


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9IQR

This is version 1.1 of the entry. See complete history

Literature

Structure-guided engineering of snake toxins for selective modulation of adrenergic and muscarinic receptors.

Zhong, Y.Tao, H.Zhang, Y.He, B.Jiao, H.Wang, D.Teng, M.Hu, H.Guo, Q.Tao, Y.

(2025) Nat Commun 16: 6478-6478

  • DOI: https://doi.org/10.1038/s41467-025-61695-0
  • Primary Citation Related Structures: 
    9IQR, 9IQS, 9IQV

  • PubMed Abstract: 

    Adrenergic receptors (ARs) and muscarinic acetylcholine receptors (mAChRs) are essential G protein-coupled receptors (GPCRs) that regulate a wide range of physiological processes. Despite their significance, developing subtype-selective modulators for these receptors has been a formidable challenge due to the high structural and sequence similarities within their subfamilies. In this study, we elucidated the recognition and regulatory mechanisms of ARs and mAChRs by muscarinic toxin 3 (MT3), a cross-reactive ligand derived from snake venom. By leveraging the distinct toxin-receptor interfaces, we engineer a panel of toxin variants capable of selectively modulating α2A and M 4 AChR using computational design and directed evolution. These subtype-selective toxins not only provide valuable tools for basic research but also hold therapeutic potential for diseases associated with these GPCRs. This study further underscores the effectiveness of structure-guided approaches in transforming venom-derived scaffolds into receptor-specific modulators.


  • Organizational Affiliation
    • Department of Laboratory Medicine, The First Affiliated Hospital of USTC, MOE Key Laboratory for Membraneless Organelles and Cellular Dynamics, Hefei National Center for Cross-disciplinary Sciences, Biomedical Sciences and Health Laboratory of Anhui Province, Center for Advanced Interdisciplinary Science and Biomedicine of IHM, Division of Life Sciences and Medicine, University of Science and Technology of China, 230027, Hefei, P.R. China.

Macromolecule Content 

  • Total Structure Weight: 56.29 kDa 
  • Atom Count: 2,622 
  • Modeled Residue Count: 325 
  • Deposited Residue Count: 498 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Muscarinic toxin 365Dendroaspis angusticepsMutation(s): 0 
UniProt
Find proteins for P81031 (Dendroaspis angusticeps)
Explore P81031 
Go to UniProtKB:  P81031
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP81031
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Alpha-2A adrenergic receptor,Soluble cytochrome b562433Homo sapienssynthetic constructMutation(s): 0 
Gene Names: ADRA2AADRA2RADRAR
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P08913 (Homo sapiens)
Explore P08913 
Go to UniProtKB:  P08913
PHAROS:  P08913
GTEx:  ENSG00000150594 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08913
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-23
    Type: Initial release
  • Version 1.1: 2026-02-04
    Changes: Data collection, Database references