9IN6

Capsid of Vibrio cholerae phage mature VP1

• PDB DOI: https://doi.org/10.2210/pdb9IN6/pdb
• EM Map EMD-60702: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Vibrio cholerae
• Mutation(s): No 


• Deposited: 2024-07-05 Released: 2024-08-14 
• Deposition Author(s): Liu, H.R., Pang, H.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Three-dimensional structures of Vibrio cholerae typing podophage VP1 in two states

Liu, H.R., Pang, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 8-mer - A7B1 Local Symmetry: Cyclic - C6  (Explore in 3D)
Local Stoichiometry: Homo 6-mer - A6 

Local Symmetry: Cyclic - C6  (Explore in 3D)
Local Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 319.01 kDa 
• Atom Count: 22,373 
• Modelled Residue Count: 2,897 
• Deposited Residue Count: 2,904 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
major capsid of VP1	A [auth M], B [auth N], C [auth O], D [auth P], E [auth Q], F [auth R], G [auth T]	399	Vibrio cholerae	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
SHP of VP1	H [auth c]	111	Vibrio cholerae	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-08-14 
Deposition Author(s): Liu, H.R., Pang, H.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	12034006
National Natural Science Foundation of China (NSFC)	China	32071209
National Natural Science Foundation of China (NSFC)	China	32200994

Revision History  

• Version 1.0: 2024-08-14
  Type: Initial release