9I8J | pdb_00009i8j

AB Spike of RHDV mutant N15

PDB DOI: https://doi.org/10.2210/pdb9I8J/pdb
EM Map EMD-52727: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Rabbit hemorrhagic disease virus
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2025-02-05 Released: 2025-12-03
Deposition Author(s): Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.
Funding Organization(s): Spanish Ministry of Science, Innovation, and Universities

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

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This is version 1.0 of the entry. See complete history.

Literature

AB Spike of RHDV mutant N15

Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.

To be published.

Macromolecule Content

Total Structure Weight: 70.27 kDa
Atom Count: 4,958
Modeled Residue Count: 679
Deposited Residue Count: 680
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP60	A, B	340	Rabbit hemorrhagic disease virus	Mutation(s): 0 Gene Names: ORF1
UniProt
Find proteins for Q86119 (Rabbit hemorrhagic disease virus (strain AST89)) Explore Q86119 Go to UniProtKB: Q86119
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q86119
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21.2_5419
RECONSTRUCTION	RELION

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-12-03

Deposition Author(s):

Martinez-Romero, J.M.

Funding Organization	Location	Grant Number
Spanish Ministry of Science, Innovation, and Universities	Spain	PID2023-146132NB-I00
Spanish Ministry of Science, Innovation, and Universities	Spain	PID2022-140925OB-I00

Revision History (Full details and data files)

Version 1.0: 2025-12-03
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.