9I5H | pdb_00009i5h

Structure of the bacterial archaellum from L. aerophila

PDB DOI: https://doi.org/10.2210/pdb9I5H/pdb
EM Map EMD-52629: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Litorilinea aerophila
Mutation(s): No

Deposited: 2025-01-28 Released: 2025-05-21
Deposition Author(s): Sivabalasarma, S., Taib, N., Mollat, C.L., Joest, M., Steimle, S., Gribaldo, S., Albers, S.-V.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.70 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

Validation slider image for 9I5H

This is version 1.0 of the entry. See complete history.

Literature

Horizontal gene transfer of the functional archaellum machinery to Bacteria

Sivabalasarma, S., Taib, N., Mollat, C.L., Joest, M., Steimle, S., Gribaldo, S., Albers, S.V.

(2025) bioRxiv

DOI: https://doi.org/10.1101/2025.02.02.636118

Macromolecule Content

Total Structure Weight: 330.97 kDa
Atom Count: 23,324
Modeled Residue Count: 3,111
Deposited Residue Count: 3,111
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Flagellin	A [auth C] B [auth D] C [auth E] D [auth F] E [auth G] A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J], I [auth K], J [auth L], K [auth M], L [auth N], M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth S]	183	Litorilinea aerophila	Mutation(s): 0
UniProt
Find proteins for A0A540VDN8 (Litorilinea aerophila) Explore A0A540VDN8 Go to UniProtKB: A0A540VDN8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A540VDN8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.70 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	v4.6
MODEL REFINEMENT	PHENIX	1.18.2_3874

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-05-21

Deposition Author(s):

Sivabalasarma, S.

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	403222702

Revision History (Full details and data files)

Version 1.0: 2025-05-21
Type: Initial release

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.