9HA9 | pdb_00009ha9

Central domain fragment of Glucan Water Dikinase-1 from S.tuberosum

PDB DOI: https://doi.org/10.2210/pdb9HA9/pdb

Classification: CYTOSOLIC PROTEIN
Organism(s): Solanum tuberosum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-11-02 Released: 2026-05-13
Deposition Author(s): Laffargue, T., Cioci, G., Cooper, N., Remaud-Simeon, M., Moulis, C.
Funding Organization(s): Agence Nationale de la Recherche (ANR)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free:
0.238 (Depositor), 0.233 (DCC)
R-Value Work:
0.215 (Depositor), 0.211 (DCC)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Central domain fragment of Glucan Water Dikinase-1 from S.tuberosum

Cioci, G., Laffargue, T., Moulis, C., Remaud-Simeon, M., Cooper, N.

To be published.

Macromolecule Content

Total Structure Weight: 105.29 kDa
Atom Count: 7,156
Modeled Residue Count: 893
Deposited Residue Count: 934
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-glucan water dikinase, chloroplastic	A, B	467	Solanum tuberosum	Mutation(s): 0 Gene Names: R1 EC: 2.7.13.3 (PDB Primary Data), 2.7.9.4 (PDB Primary Data)
UniProt
Find proteins for Q9AWA5 (Solanum tuberosum) Explore Q9AWA5 Go to UniProtKB: Q9AWA5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9AWA5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.238 (Depositor), 0.233 (DCC)
R-Value Work: 0.215 (Depositor), 0.211 (DCC)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 110.312	α = 90
b = 110.312	β = 90
c = 209.177	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-05-13

Deposition Author(s):

Remaud-Simeon, M.

Funding Organization	Location	Grant Number
Agence Nationale de la Recherche (ANR)	France	--

Revision History (Full details and data files)

Version 1.0: 2026-05-13
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.