9H70 | pdb_00009h70

Crystal structure of LMTP1

PDB DOI: https://doi.org/10.2210/pdb9H70/pdb

Classification: PHOTOSYNTHESIS
Organism(s): Chlamydomonas reinhardtii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-10-25 Released: 2025-11-05
Deposition Author(s): Siponen, M.I., Vidal Meireles, A., Malesinski, S., Johnson, X.
Funding Organization(s): Agence Nationale de la Recherche (ANR)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å
R-Value Free:
0.365 (Depositor), 0.367 (DCC)
R-Value Work:
0.318 (Depositor), 0.323 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of LMTP1

Siponen, M.I., Vidal Meireles, A., Malesinski, S., Johnson, X.

To be published.

Macromolecule Content

Total Structure Weight: 21.36 kDa
Atom Count: 1,321
Modeled Residue Count: 154
Deposited Residue Count: 193
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TPM domain-containing protein	A	193	Chlamydomonas reinhardtii	Mutation(s): 0 Gene Names: CHLRE_15g636050v5
UniProt
Find proteins for A8JDW2 (Chlamydomonas reinhardtii) Explore A8JDW2 Go to UniProtKB: A8JDW2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A8JDW2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA (Subject of Investigation/LOI) Query on CA Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å
R-Value Free: 0.365 (Depositor), 0.367 (DCC)
R-Value Work: 0.318 (Depositor), 0.323 (DCC)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 93.93	α = 90
b = 93.93	β = 90
c = 52.378	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
autoPROC	data scaling
MrBUMP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-11-05

Deposition Author(s):

Vidal Meireles, A.

Funding Organization	Location	Grant Number
Agence Nationale de la Recherche (ANR)	France	--

Revision History (Full details and data files)

Version 1.0: 2025-11-05
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.