9H4F | pdb_00009h4f

Structure of Imine Reductase 361 from Micromonospora sp. mutant M125W/I127F/L179V/H250L


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.77 Å
  • R-Value Free: 
    0.304 (Depositor), 0.306 (DCC) 
  • R-Value Work: 
    0.226 (Depositor), 0.233 (DCC) 
  • R-Value Observed: 
    0.229 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


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Literature

Engineered Biocatalyst for Enantioselective Hydrazone Reduction.

Hutton, A.E.Zhao, F.Ho, E.Domenech, J.Harawa, V.Brown, M.J.B.Grogan, G.Clayman, P.D.Turner, N.J.Green, A.P.

(2025) Angew Chem Int Ed Engl 64: e202424350-e202424350

  • DOI: https://doi.org/10.1002/anie.202424350
  • Primary Citation Related Structures: 
    9H4F

  • PubMed Abstract: 

    Enantioselective reduction of hydrazones provides a convergent and versatile route to synthesize hydrazine-containing motifs that are commonly found in pharmaceuticals and agrochemicals. However, current methods require the use of precious metals, costly chiral ligands, and/or forcing reaction conditions. Here, we report the development of a biocatalytic approach for enantioselective hydrazone reduction using engineered imine reductases. Following evaluation of an in-house panel of >400 IRED sequences, we identified a single IR361 I127F L179V variant that promotes reduction of Cbz-protected hydrazones. The introduction of additional two mutations via directed evolution afforded HRED1.1 that is 20-fold more active than the parent template and promotes reduction of a variety of protected hydrazones in high yields and selectivities (>99% e.e.), including in preparative scale biotransformations. Structural analysis of HRED1.1 provides insights into the origins of its unique hydrazone reductase activity. This study offers a powerful biocatalytic route to synthesize valuable chiral hydrazine products and further expands the impressive range of transformations accessible with engineered imine reductases.


  • Organizational Affiliation
    • Manchester Institute of Biotechnology and Department of Chemistry, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.

Macromolecule Content 

  • Total Structure Weight: 63.97 kDa 
  • Atom Count: 3,785 
  • Modeled Residue Count: 579 
  • Deposited Residue Count: 594 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
6-phosphogluconate dehydrogenase
A, B
297MicromonosporaMutation(s): 4 
Gene Names: BSA16_00815
UniProt
Find proteins for A0ACD6BA29 (Micromonospora sp. Rc5)
Explore A0ACD6BA29 
Go to UniProtKB:  A0ACD6BA29
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0ACD6BA29
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAP
(Subject of Investigation/LOI)

Query on NAP



Download:Ideal Coordinates CCD File
C [auth A]NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.77 Å
  • R-Value Free:  0.304 (Depositor), 0.306 (DCC) 
  • R-Value Work:  0.226 (Depositor), 0.233 (DCC) 
  • R-Value Observed: 0.229 (Depositor) 
Space Group: I 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 184.268α = 90
b = 184.268β = 90
c = 184.268γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-27
    Type: Initial release